Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL596275.2-204ENST00000641628 552 ntBASIC5.25□□□□□ -1.57
SMARCA1P28370 AL596275.2-206ENST00000641957 626 ntBASIC5.25□□□□□ -1.57
SMARCA1P28370 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SMARCA1P28370 AP000542.2-201ENST00000623199 6179 ntBASIC5.25□□□□□ -1.57
SMARCA1P28370 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SMARCA1P28370 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.25□□□□□ -1.57
SMARCA1P28370 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.25□□□□□ -1.57
SMARCA1P28370 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
SMARCA1P28370 MFSD8-242ENST00000641690 4199 ntBASIC5.25□□□□□ -1.57
SMARCA1P28370 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SMARCA1P28370 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SMARCA1P28370 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.25□□□□□ -1.57
SMARCA1P28370 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.25□□□□□ -1.57
SMARCA1P28370 RAD17P1-201ENST00000418130 2042 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SMARCA1P28370 OR52B1P-201ENST00000316506 909 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 RNU4-24P-201ENST00000364565 139 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SMARCA1P28370 Y_RNA.625-201ENST00000411256 107 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC068533.2-201ENST00000411872 306 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 ELOCP19-201ENST00000411919 318 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 TIMM9P2-201ENST00000419324 266 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 RPEP3-201ENST00000425462 676 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AL031736.2-201ENST00000426573 787 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 RPP40P1-201ENST00000426762 456 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 SKP1P3-201ENST00000429280 487 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 MTND1P20-201ENST00000430341 950 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC098826.1-201ENST00000433943 471 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 RPS26P40-201ENST00000435209 294 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 MTCO2P16-201ENST00000436962 677 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 GEMIN8P3-201ENST00000445417 720 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 ARL2BPP10-201ENST00000446487 531 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AL034418.1-201ENST00000448675 860 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 NDUFA12P1-201ENST00000455914 406 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 snoU13.1-201ENST00000459157 104 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC053481.1-201ENST00000467217 306 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC010683.1-201ENST00000473673 378 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 RPL23AP65-201ENST00000475608 468 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 MTND5P13-201ENST00000513046 1079 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AF279873.1-201ENST00000523393 313 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.24□□□□□ -1.57
SMARCA1P28370 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SMARCA1P28370 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 AC103987.3-201ENST00000582071 292 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 MIR4715-201ENST00000584117 79 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC091178.1-203ENST00000584586 279 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.24□□□□□ -1.57
SMARCA1P28370 RPL12P25-202ENST00000598100 674 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AP001981.2-201ENST00000603241 418 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC008083.4-201ENST00000615076 444 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 Z69908.1-201ENST00000622603 247 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 AC098679.4-201ENST00000624241 654 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.24□□□□□ -1.57
SMARCA1P28370 MTND4P34-201ENST00000572715 1371 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SMARCA1P28370 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.24□□□□□ -1.57
SMARCA1P28370 CR381670.1-201ENST00000624291 1693 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 SALL4P2-201ENST00000423288 2910 ntBASIC5.24□□□□□ -1.57
SMARCA1P28370 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SMARCA1P28370 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC007390.2-201ENST00000606229 3803 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SMARCA1P28370 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.23□□□□□ -1.57
SMARCA1P28370 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SMARCA1P28370 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SMARCA1P28370 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
SMARCA1P28370 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SMARCA1P28370 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SMARCA1P28370 SNORA56-201ENST00000383966 129 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 RNU6-1151P-201ENST00000384684 107 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC5.23□□□□□ -1.57
SMARCA1P28370 FAR2P2-201ENST00000413041 594 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 BOLA3P4-201ENST00000418151 400 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AC062016.2-201ENST00000420950 676 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AL356387.2-201ENST00000422272 243 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 FAR2P4-202ENST00000425399 584 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC068287.1-201ENST00000430283 295 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AC010153.1-201ENST00000432862 727 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 MTCO3P5-201ENST00000433620 714 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC009961.3-201ENST00000449832 765 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.23□□□□□ -1.57
SMARCA1P28370 AC012671.1-201ENST00000451912 203 ntBASIC5.23□□□□□ -1.57
SMARCA1P28370 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.23□□□□□ -1.57
SMARCA1P28370 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.23□□□□□ -1.57
SMARCA1P28370 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.23□□□□□ -1.57
SMARCA1P28370 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms