Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A3P25940 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A3P25940 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A3P25940 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A3P25940 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A3P25940 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A3P25940 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.95□□□□□ -1.78
COL5A3P25940 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A3P25940 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A3P25940 MIR449A-201ENST00000362113 91 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL5A3P25940 XGY1-201ENST00000381172 446 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 HMGB3P18-201ENST00000406327 590 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.95□□□□□ -1.78
COL5A3P25940 RPS12P18-201ENST00000442381 270 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 RPL5P16-201ENST00000471467 790 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AC004924.1-201ENST00000480160 781 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.95□□□□□ -1.78
COL5A3P25940 AP002404.1-201ENST00000532005 451 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AL512310.1-201ENST00000548639 172 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 H3F3AP1-201ENST00000559984 334 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 CYCSP41-201ENST00000616920 296 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AC099506.2-201ENST00000623074 221 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AL359715.5-201ENST00000623431 443 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A3P25940 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL5A3P25940 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A3P25940 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
COL5A3P25940 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A3P25940 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A3P25940 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A3P25940 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.94□□□□□ -1.78
COL5A3P25940 MIR448-201ENST00000362131 111 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 RNU4-44P-201ENST00000363050 141 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 U3.12-201ENST00000364498 214 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 AC069540.1-201ENST00000446320 988 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 AC016696.1-201ENST00000446949 318 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 MTND2P25-201ENST00000449028 610 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 MRPS31P2-201ENST00000451581 518 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 MRPL35P4-201ENST00000453682 566 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A3P25940 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A3P25940 AC118465.1-201ENST00000513820 1271 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 RNU1-143P-201ENST00000516296 146 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 RNU6ATAC39P-201ENST00000516309 149 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 AC009812.2-201ENST00000517657 457 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.94□□□□□ -1.78
COL5A3P25940 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.94□□□□□ -1.78
COL5A3P25940 CYP2C60P-201ENST00000566088 139 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 RPL12P50-201ENST00000603116 116 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 PRELID3BP8-201ENST00000604148 295 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.94□□□□□ -1.78
COL5A3P25940 AC245100.7-201ENST00000609678 442 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 U1.23-201ENST00000610293 146 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 RNU1-68P-201ENST00000615382 146 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 MIR6715A-201ENST00000615929 79 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 U1.39-201ENST00000621562 146 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
COL5A3P25940 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL5A3P25940 SRP72P2-201ENST00000344851 1979 ntBASIC3.94□□□□□ -1.78
COL5A3P25940 AC092111.2-201ENST00000611627 1414 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL5A3P25940 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL5A3P25940 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
COL5A3P25940 OR6C64P-201ENST00000419708 825 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 ELOCP23-201ENST00000452014 332 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AL109933.2-201ENST00000452651 260 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 RPS4XP22-201ENST00000480755 780 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AC022882.1-201ENST00000532142 501 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.93□□□□□ -1.78
COL5A3P25940 AL390838.2-201ENST00000602394 274 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AC103881.1-201ENST00000603476 538 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AC233280.2-201ENST00000603917 1070 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.93□□□□□ -1.78
COL5A3P25940 AL137790.1-201ENST00000634283 177 ntBASIC3.93□□□□□ -1.78
COL5A3P25940 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL5A3P25940 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
COL5A3P25940 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.93□□□□□ -1.78
COL5A3P25940 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
COL5A3P25940 MIR30E-201ENST00000362104 92 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 RNA5SP126-201ENST00000365092 109 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 RN7SKP222-201ENST00000410651 315 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL5A3P25940 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.92□□□□□ -1.78
COL5A3P25940 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 HMGB1P3-201ENST00000502802 616 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.92□□□□□ -1.78
COL5A3P25940 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 HMGB1P6-201ENST00000569046 646 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 uc_338.32-201ENST00000615087 172 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AC009237.17-201ENST00000618111 748 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.92□□□□□ -1.78
COL5A3P25940 AC090971.4-201ENST00000560291 1800 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL5A3P25940 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL5A3P25940 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
COL5A3P25940 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 AL139281.1-201ENST00000422120 335 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms