Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 RPL7P32-201ENST00000457119 744 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 PARP4P3-201ENST00000510265 317 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC012182.1-201ENST00000570133 895 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 MIR4284-201ENST00000578924 81 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC091178.1-203ENST00000584586 279 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC023762.1-201ENST00000603280 584 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 RPL21P136-201ENST00000605378 396 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC008966.2-201ENST00000606157 453 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL031666.3-201ENST00000609320 1006 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC090116.1-201ENST00000615679 446 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC090506.2-201ENST00000624521 419 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC006065.6-201ENST00000625201 545 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 U6.98-201ENST00000637157 84 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AP001350.1-201ENST00000601906 1524 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 CPHL1P-201ENST00000461341 3407 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 LINC00622-201ENST00000562811 1570 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 RNA5SP151-201ENST00000365632 117 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 MIR659-201ENST00000384963 97 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 AL138878.1-201ENST00000405131 347 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 ELOCP19-201ENST00000411919 318 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 RAD23BP1-201ENST00000421404 1227 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 RPL7AP25-201ENST00000423357 805 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 MTND2P11-201ENST00000423638 648 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 RPL21P66-201ENST00000426566 466 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC004022.1-201ENST00000447766 1066 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AL034418.1-201ENST00000448675 860 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 RPL21P18-201ENST00000469899 480 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 VN1R17P-201ENST00000472048 1090 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 OR5H5P-201ENST00000503164 928 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 RNU6-1073P-201ENST00000517182 106 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC010476.1-201ENST00000519111 851 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 HIGD1AP5-201ENST00000529959 259 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 MTND5P21-201ENST00000531961 522 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 SNORD39.3-201ENST00000584451 71 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC006023.2-201ENST00000609916 167 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AP000255.1-201ENST00000610276 676 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC012409.3-201ENST00000611343 981 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 AC008759.3-201ENST00000613300 508 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 AL391261.4-201ENST00000616012 481 ntBASIC4.2□□□□□ -1.74
VMP1Q96GC9 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
VMP1Q96GC9 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VMP1Q96GC9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.19□□□□□ -1.74
VMP1Q96GC9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VMP1Q96GC9 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VMP1Q96GC9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.19□□□□□ -1.74
VMP1Q96GC9 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VMP1Q96GC9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VMP1Q96GC9 RNA5SP447-201ENST00000363749 119 ntBASIC4.19□□□□□ -1.74
VMP1Q96GC9 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VMP1Q96GC9 RPL31P1-201ENST00000398116 372 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms