Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RPL23AP62-201ENST00000463396 453 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC087385.1-201ENST00000475062 312 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 KCTD9P5-201ENST00000504141 1170 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC107934.2-201ENST00000518653 310 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AL049634.3-201ENST00000604968 457 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AL592494.3-201ENST00000609485 464 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 AP003355.3-201ENST00000623465 114 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 USP8P1-201ENST00000494673 3183 ntBASIC3.86□□□□□ -1.79
CCDC112Q8NEF3 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 RNU6-213P-201ENST00000384051 104 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 HMGB3P23-201ENST00000414981 585 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC006946.1-201ENST00000429106 328 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 USP9YP31-201ENST00000431405 881 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 RPL9P32-201ENST00000464118 620 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 MIR4512-201ENST00000583257 77 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC016252.1-201ENST00000609721 474 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 AC005344.1-201ENST00000613391 459 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 NMD3P1-201ENST00000439704 1488 ntBASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC112Q8NEF3 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 OR4A15-201ENST00000314706 1035 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AL583834.1-201ENST00000406943 343 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 RPL31P52-201ENST00000407532 367 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AL445584.1-201ENST00000431451 330 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AC006511.1-201ENST00000470614 315 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 TRAV37-201ENST00000553906 342 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 AC053481.3-201ENST00000577881 843 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 MIR4444-1-201ENST00000581696 74 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 MIR4444-2-201ENST00000584390 74 ntBASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC112Q8NEF3 FAM91A3P-201ENST00000456826 2544 ntBASIC3.84□□□□□ -1.8
CCDC112Q8NEF3 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.84□□□□□ -1.8
CCDC112Q8NEF3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC112Q8NEF3 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
CCDC112Q8NEF3 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.84□□□□□ -1.8
CCDC112Q8NEF3 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 MIR7-3-201ENST00000384898 110 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 RN7SKP156-201ENST00000410308 342 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AL591419.1-201ENST00000427423 339 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 ISCA1P2-201ENST00000438679 421 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 CEACAMP4-201ENST00000457676 421 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 LARP7P4-201ENST00000481075 878 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AC092185.1-201ENST00000491371 97 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 RNA5SP380-201ENST00000517190 98 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AC006254.3-201ENST00000603353 884 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms