Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AP005262.1-201ENST00000582646 997 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AL133338.2-201ENST00000604292 736 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AC091946.2-201ENST00000606105 291 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 RN7SKP299-201ENST00000606679 301 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AC010424.2-201ENST00000607594 443 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 MIR3653-201ENST00000625572 110 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AC134882.1-201ENST00000603738 1676 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SMC1BQ8NDV3 AC093591.2-201ENST00000565254 3843 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PCAT14-202ENST00000627127 3935 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC006206.1-201ENST00000544842 3387 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 Y_RNA.194-201ENST00000363985 102 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 SNORA71.2-201ENST00000364941 134 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RNA5SP223-201ENST00000365174 120 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 MIR200C-201ENST00000384980 68 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 MT-TH-201ENST00000387441 69 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 U3.28-201ENST00000391249 210 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RN7SKP267-201ENST00000410381 285 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RN7SKP159-201ENST00000410657 292 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC002524.1-201ENST00000411687 547 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 BOLA3P4-201ENST00000418151 400 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 IFNNP1-201ENST00000429219 553 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AL589823.1-201ENST00000429577 183 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 SUN3-208ENST00000453192 801 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 CCDC75P1-201ENST00000469247 791 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC072039.1-201ENST00000477611 581 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 MTND4P2-201ENST00000507767 1203 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RNU1-6P-201ENST00000516290 144 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 snoU109.6-201ENST00000516831 118 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC007115.1-201ENST00000546853 234 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 RN7SL802P-201ENST00000577858 299 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC013562.2-201ENST00000611632 603 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 AC026585.1-201ENST00000619582 524 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 ZNF833P-201ENST00000424938 1494 ntBASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMC1BQ8NDV3 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 MTND4P34-201ENST00000572715 1371 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 RNU6-115P-201ENST00000364310 107 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 NPM1P11-201ENST00000417106 855 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 TMBIM7P-201ENST00000418074 855 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC011998.1-201ENST00000433403 117 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 NDUFA5P7-201ENST00000452914 242 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 RPL21P126-201ENST00000470049 478 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC073073.1-201ENST00000493920 463 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 ARL4AP1-201ENST00000503220 705 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC112198.1-201ENST00000505369 1220 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.69□□□□□ -1.5
SMC1BQ8NDV3 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms