Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RPL7P52-201ENST00000449200 742 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RPS15AP1-201ENST00000457423 391 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RPL23AP24-201ENST00000458203 385 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 MIR2114-201ENST00000516645 80 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 HMGB1P1-201ENST00000522557 636 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC138701.1-201ENST00000524329 714 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 OR4A45P-201ENST00000529954 901 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC006064.5-201ENST00000541782 248 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 SYF2P1-201ENST00000550658 413 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC106734.1-201ENST00000568646 663 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC012254.4-201ENST00000588843 273 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC011468.4-201ENST00000603942 409 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 BNIP3P4-201ENST00000604946 565 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AP003392.5-201ENST00000607857 415 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL513477.2-201ENST00000607858 568 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 MLECP1-201ENST00000615893 709 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RMST_10.1-201ENST00000616309 154 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL627171.1-201ENST00000618845 1308 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AC025263.3-201ENST00000622965 1396 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 BDP1P-201ENST00000582658 1990 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 RNA5SP509-201ENST00000364577 119 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC068538.1-201ENST00000376856 336 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-1226P-201ENST00000384317 107 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 SNORA37-201ENST00000384504 129 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-1005P-201ENST00000384519 107 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 U3.22-201ENST00000391120 215 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC097374.1-203ENST00000400783 485 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 UBE2V1P15-201ENST00000407776 448 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 RNU4-25P-201ENST00000410569 230 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL158825.1-201ENST00000414735 521 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 SNRPFP1-201ENST00000414761 252 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC087650.1-201ENST00000431445 468 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC011276.1-201ENST00000469688 323 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 RN7SL303P-201ENST00000469773 251 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 IGKV2-38-201ENST00000517443 247 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 HIGD1AP10-201ENST00000527837 282 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL109766.1-201ENST00000555080 552 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC104229.1-201ENST00000561364 255 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AL020997.2-201ENST00000602607 184 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC115286.1-201ENST00000604298 434 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC016542.1-201ENST00000608259 493 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 MIR486-1-201ENST00000612171 68 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 MIR8058-201ENST00000615737 89 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC095038.2-201ENST00000621464 1070 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC020923.1-201ENST00000624021 917 ntBASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.86□□□□□ -1.79
ZNF540Q8NDQ6 AC007256.1-201ENST00000392253 2765 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 AL136164.4-201ENST00000625013 2135 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 SNORD56.4-201ENST00000363883 71 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 MIR591-201ENST00000385290 95 ntBASIC3.85□□□□□ -1.79
ZNF540Q8NDQ6 MIR3065-201ENST00000390137 79 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms