Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RNU6-996P-201ENST00000365438 107 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RPL32P23-201ENST00000397237 405 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MRPL53P1-201ENST00000414323 319 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MTCO2P27-201ENST00000420740 428 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC115283.1-201ENST00000427353 400 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC006548.1-201ENST00000427470 102 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 OR7E116P-201ENST00000448529 957 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC007547.1-201ENST00000462177 490 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RPL32P9-201ENST00000487963 407 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC093267.1-201ENST00000489176 961 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RN7SL57P-201ENST00000493687 290 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 BTF3P13-201ENST00000513224 490 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RN7SKP256-201ENST00000517201 314 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RPL12P48-201ENST00000605620 304 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MIR6071-201ENST00000616741 78 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 CR392039.4-201ENST00000624968 501 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 CR381572.1-201ENST00000625098 102 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 AC097714.1-201ENST00000511272 1647 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 XPOTP1-201ENST00000443317 2398 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RN7SKP6-201ENST00000364795 319 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RN7SKP186-201ENST00000365371 303 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 MIR1203-201ENST00000408812 85 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RNU6-193P-201ENST00000410977 107 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 PRELID3BP11-201ENST00000414230 479 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC096632.1-201ENST00000427395 310 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RPS15AP9-201ENST00000439856 381 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 TRAPPC2P8-201ENST00000440676 396 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.631-201ENST00000459607 101 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 GMFBP1-201ENST00000467831 427 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 MTCO1P29-201ENST00000496868 288 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC114781.3-201ENST00000512083 142 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC105417.1-201ENST00000514691 285 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RNU4-49P-201ENST00000516080 140 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 TOMM20P1-201ENST00000534518 427 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AC087763.1-201ENST00000603391 286 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AL158196.1-201ENST00000616786 434 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 221.8 ms