Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 HMGN2P8-201ENST00000391458 268 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AL138885.1-201ENST00000405921 675 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC002553.2-201ENST00000453217 340 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 RN7SL594P-201ENST00000470590 287 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC105918.1-201ENST00000474399 838 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC068724.1-201ENST00000487100 792 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 APOOP4-201ENST00000513530 597 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC104763.2-201ENST00000604179 382 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC244205.2-202ENST00000635781 342 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 AC068647.1-201ENST00000489539 2265 ntBASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC88AQ3V6T2 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 RNA5SP184-201ENST00000411071 108 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 RPL7P59-201ENST00000447700 943 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 RPL12P22-201ENST00000519073 490 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL451049.1-201ENST00000608672 497 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL158196.1-201ENST00000616786 434 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 MTCO3P16-201ENST00000454456 754 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC023598.1-201ENST00000472521 361 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL121576.1-201ENST00000556055 276 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL162713.1-201ENST00000604480 262 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 AL031985.3-201ENST00000565390 2449 ntBASIC4.07□□□□□ -1.76
CCDC88AQ3V6T2 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC087190.4-201ENST00000574616 8334 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 LINC01355-201ENST00000566551 5444 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 TRGV5P-201ENST00000419915 354 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 RPS26P47-201ENST00000427219 348 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 SETP5-201ENST00000437270 562 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 HMGB3P9-201ENST00000441799 583 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 RPS29P26-201ENST00000477483 171 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC022080.3-201ENST00000544433 482 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC141257.3-201ENST00000572906 215 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 MIR3945-201ENST00000581853 98 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 AC006557.5-201ENST00000603126 811 ntBASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC88AQ3V6T2 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RHEBP3-201ENST00000411920 351 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC006028.1-201ENST00000438379 402 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RPL7L1P13-201ENST00000511702 739 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 ZNF826P-207ENST00000622273 1910 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 AL513302.2-201ENST00000562313 1842 ntBASIC4.05□□□□□ -1.76
CCDC88AQ3V6T2 THAP12P8-201ENST00000447914 2115 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms