Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ELOCP30-201ENST00000447108 299 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RN7SL558P-201ENST00000497468 299 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-709P-201ENST00000517257 104 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AP002963.1-201ENST00000530590 184 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC137768.1-201ENST00000549998 553 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL389895.1-201ENST00000554127 252 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SULT1C2P1-202ENST00000562418 459 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 BGLT3-201ENST00000564523 994 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC107982.3-201ENST00000584957 985 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC128687.1-201ENST00000605304 619 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC103591.3-201ENST00000608684 209 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AP000254.1-201ENST00000609934 520 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC026585.1-201ENST00000619582 524 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC012414.7-202ENST00000622705 1090 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC107068.1-201ENST00000563286 4218 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 SAMMSON-226ENST00000642089 1582 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 CYP1D1P-201ENST00000416662 1433 ntBASIC4.72□□□□□ -1.65
PTCHD3Q3KNS1 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
PTCHD3Q3KNS1 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-462P-201ENST00000362659 105 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 Y_RNA.559-201ENST00000384686 107 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-603P-201ENST00000411403 107 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 CKS1BP6-201ENST00000424932 240 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MTCO3P30-201ENST00000426425 670 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MTND4P6-201ENST00000438297 472 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MTCO1P19-201ENST00000443487 500 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MTCO1P48-201ENST00000448024 1096 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 OR6C5P-201ENST00000452388 923 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-956P-201ENST00000458868 103 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RNA5SP103-201ENST00000459503 118 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL809P-201ENST00000482040 297 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC090071.1-201ENST00000507713 644 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC060788.1-201ENST00000521318 469 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC087276.1-201ENST00000529659 480 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC090502.2-201ENST00000549267 280 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL390726.5-202ENST00000564800 256 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MIR3667-201ENST00000581025 74 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 MIR4737-201ENST00000583979 81 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC068790.6-201ENST00000602558 258 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC087752.4-201ENST00000605911 462 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL031775.1-201ENST00000607014 887 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC015871.5-202ENST00000623252 701 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AC092184.1-201ENST00000625042 715 ntBASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
PTCHD3Q3KNS1 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL034370.1-201ENST00000397254 1590 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AP000542.2-201ENST00000623199 6179 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms