Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
H3F3AP84243 AC090337.1-201ENST00000579651 2074 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.18□□□□□ -1.9
H3F3AP84243 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
H3F3AP84243 SNORD65-201ENST00000391079 73 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 PTMAP2-201ENST00000397627 327 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 RPL31P45-201ENST00000419532 356 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 RPL31P12-201ENST00000422587 358 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.18□□□□□ -1.9
H3F3AP84243 MTCYBP21-201ENST00000443300 1113 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 AL353898.1-201ENST00000444055 238 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 HMGB3P8-201ENST00000449709 577 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.18□□□□□ -1.9
H3F3AP84243 RBMY2UP-201ENST00000453474 324 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 AC010468.1-201ENST00000461022 817 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 TMED11P-201ENST00000479478 690 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 ARL2BPP6-201ENST00000512757 439 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 HMGN1P15-201ENST00000513870 295 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 RN7SKP60-201ENST00000516985 239 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 AC023632.4-201ENST00000517783 191 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 MED28P5-201ENST00000528254 438 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 MTND5P21-201ENST00000531961 522 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.18□□□□□ -1.9
H3F3AP84243 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.18□□□□□ -1.9
H3F3AP84243 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.18□□□□□ -1.9
H3F3AP84243 AC106785.3-201ENST00000564064 847 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 AC006116.10-201ENST00000591836 581 ntBASIC3.18□□□□□ -1.9
H3F3AP84243 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.18□□□□□ -1.9
H3F3AP84243 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.18□□□□□ -1.9
H3F3AP84243 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.18□□□□□ -1.9
H3F3AP84243 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
H3F3AP84243 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.18□□□□□ -1.9
H3F3AP84243 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
H3F3AP84243 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
H3F3AP84243 RNF6P1-201ENST00000444889 1784 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.17□□□□□ -1.9
H3F3AP84243 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.17□□□□□ -1.9
H3F3AP84243 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.17□□□□□ -1.9
H3F3AP84243 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 RN7SKP53-201ENST00000411337 315 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC004987.3-201ENST00000413879 771 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 RPS15AP6-201ENST00000420703 385 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL049610.1-201ENST00000423374 372 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 MRPS18BP2-201ENST00000434310 759 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.17□□□□□ -1.9
H3F3AP84243 AL157884.3-201ENST00000448273 1184 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC006539.3-201ENST00000454258 129 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC007967.1-201ENST00000455422 1159 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 SNRPGP3-201ENST00000469405 227 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 SETP14-201ENST00000497538 873 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 HMGB1P21-201ENST00000502313 581 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 RN7SKP13-201ENST00000515933 244 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 RNU2-27P-201ENST00000516185 142 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.17□□□□□ -1.9
H3F3AP84243 AC093331.1-201ENST00000521474 169 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 PTP4A1P6-201ENST00000531034 478 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL139174.1-201ENST00000531489 886 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.17□□□□□ -1.9
H3F3AP84243 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.17□□□□□ -1.9
H3F3AP84243 MIR3186-201ENST00000577404 85 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 MIR4425-201ENST00000580572 84 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 LLPHP1-201ENST00000603571 367 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 AL365503.1-201ENST00000605247 905 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.17□□□□□ -1.9
H3F3AP84243 MIR7851-201ENST00000610611 160 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
H3F3AP84243 AL034408.1-202ENST00000636088 415 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 U6.98-201ENST00000637157 84 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 MFSD8-233ENST00000641482 4860 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.17□□□□□ -1.9
H3F3AP84243 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.17□□□□□ -1.9
H3F3AP84243 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.17□□□□□ -1.9
H3F3AP84243 AC068647.1-201ENST00000489539 2265 ntBASIC3.17□□□□□ -1.9
H3F3AP84243 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
H3F3AP84243 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms