Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL359715.5-201ENST00000623431 443 ntBASIC4.72□□□□□ -1.65
MSH6P52701 USP8P1-201ENST00000494673 3183 ntBASIC4.72□□□□□ -1.65
MSH6P52701 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
MSH6P52701 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.72□□□□□ -1.65
MSH6P52701 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
MSH6P52701 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
MSH6P52701 NMD3P1-201ENST00000439704 1488 ntBASIC4.71□□□□□ -1.65
MSH6P52701 RNA5SP197-201ENST00000363357 119 ntBASIC4.71□□□□□ -1.66
MSH6P52701 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MSH6P52701 RSL24D1P1-201ENST00000404972 493 ntBASIC4.71□□□□□ -1.66
MSH6P52701 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH6P52701 USP12PY-201ENST00000427677 1064 ntBASIC4.71□□□□□ -1.66
MSH6P52701 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH6P52701 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH6P52701 AC026801.2-201ENST00000515352 425 ntBASIC4.71□□□□□ -1.66
MSH6P52701 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.71□□□□□ -1.66
MSH6P52701 AP002404.1-201ENST00000532005 451 ntBASIC4.71□□□□□ -1.66
MSH6P52701 AC092868.3-201ENST00000560515 784 ntBASIC4.71□□□□□ -1.66
MSH6P52701 AL133457.1-201ENST00000564251 987 ntBASIC4.71□□□□□ -1.66
MSH6P52701 AC115989.2-201ENST00000578640 563 ntBASIC4.71□□□□□ -1.66
MSH6P52701 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
MSH6P52701 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
MSH6P52701 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
MSH6P52701 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
MSH6P52701 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
MSH6P52701 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 AL589994.1-201ENST00000404962 340 ntBASIC4.7□□□□□ -1.66
MSH6P52701 AC007899.1-201ENST00000412776 775 ntBASIC4.7□□□□□ -1.66
MSH6P52701 MTND4LP21-201ENST00000415303 295 ntBASIC4.7□□□□□ -1.66
MSH6P52701 RPL23AP69-201ENST00000431134 458 ntBASIC4.7□□□□□ -1.66
MSH6P52701 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH6P52701 RN7SL863P-201ENST00000462370 296 ntBASIC4.7□□□□□ -1.66
MSH6P52701 CCDC75P1-201ENST00000469247 791 ntBASIC4.7□□□□□ -1.66
MSH6P52701 RPL23AP71-201ENST00000470966 469 ntBASIC4.7□□□□□ -1.66
MSH6P52701 S100A11P1-201ENST00000477525 312 ntBASIC4.7□□□□□ -1.66
MSH6P52701 TRBV8-1-201ENST00000481590 279 ntBASIC4.7□□□□□ -1.66
MSH6P52701 RNA5SP356-201ENST00000515972 94 ntBASIC4.7□□□□□ -1.66
MSH6P52701 OR4R3P-201ENST00000525084 838 ntBASIC4.7□□□□□ -1.66
MSH6P52701 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH6P52701 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH6P52701 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.7□□□□□ -1.66
MSH6P52701 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.7□□□□□ -1.66
MSH6P52701 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
MSH6P52701 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
MSH6P52701 AL356489.2-201ENST00000566968 3528 ntBASIC4.7□□□□□ -1.66
MSH6P52701 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH6P52701 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.69□□□□□ -1.66
MSH6P52701 AL121877.1-201ENST00000453704 622 ntBASIC4.69□□□□□ -1.66
MSH6P52701 FGF7P3-201ENST00000454645 303 ntBASIC4.69□□□□□ -1.66
MSH6P52701 AP002371.1-201ENST00000463604 433 ntBASIC4.69□□□□□ -1.66
MSH6P52701 RPL31P50-201ENST00000471002 296 ntBASIC4.69□□□□□ -1.66
MSH6P52701 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.69□□□□□ -1.66
MSH6P52701 snoU109.6-201ENST00000516831 118 ntBASIC4.69□□□□□ -1.66
MSH6P52701 AL049844.2-201ENST00000604280 628 ntBASIC4.69□□□□□ -1.66
MSH6P52701 HMGB1P50-201ENST00000605814 607 ntBASIC4.69□□□□□ -1.66
MSH6P52701 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH6P52701 FAM35DP-201ENST00000323387 2712 ntBASIC4.69□□□□□ -1.66
MSH6P52701 AC093909.5-201ENST00000621839 1799 ntBASIC4.69□□□□□ -1.66
MSH6P52701 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
MSH6P52701 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSH6P52701 AC005183.1-201ENST00000603687 1979 ntBASIC4.69□□□□□ -1.66
MSH6P52701 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSH6P52701 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH6P52701 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.68□□□□□ -1.66
MSH6P52701 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
MSH6P52701 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH6P52701 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH6P52701 AL139413.1-201ENST00000421309 217 ntBASIC4.68□□□□□ -1.66
MSH6P52701 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH6P52701 IFNNP1-201ENST00000429219 553 ntBASIC4.68□□□□□ -1.66
MSH6P52701 AL513175.1-201ENST00000431492 780 ntBASIC4.68□□□□□ -1.66
MSH6P52701 RPS20P1-201ENST00000434853 354 ntBASIC4.68□□□□□ -1.66
MSH6P52701 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH6P52701 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH6P52701 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSH6P52701 AC005476.1-201ENST00000554427 397 ntBASIC4.68□□□□□ -1.66
MSH6P52701 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.68□□□□□ -1.66
MSH6P52701 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH6P52701 AL390838.2-201ENST00000602394 274 ntBASIC4.68□□□□□ -1.66
MSH6P52701 RNVU1-4-201ENST00000612985 164 ntBASIC4.68□□□□□ -1.66
MSH6P52701 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.68□□□□□ -1.66
MSH6P52701 AC006840.1-201ENST00000623069 542 ntBASIC4.68□□□□□ -1.66
MSH6P52701 AL732372.2-225ENST00000642124 456 ntBASIC4.68□□□□□ -1.66
MSH6P52701 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSH6P52701 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.68□□□□□ -1.66
MSH6P52701 MAPK10-373ENST00000641983 6772 ntBASIC4.68□□□□□ -1.66
MSH6P52701 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSH6P52701 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 RPL21P109-201ENST00000422213 475 ntBASIC4.67□□□□□ -1.66
MSH6P52701 MOB1AP1-201ENST00000430903 535 ntBASIC4.67□□□□□ -1.66
MSH6P52701 MTND2P25-201ENST00000449028 610 ntBASIC4.67□□□□□ -1.66
MSH6P52701 SYT14P1-201ENST00000481459 721 ntBASIC4.67□□□□□ -1.66
MSH6P52701 AL035404.1-201ENST00000497982 568 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms