Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 OR4A2P-201ENST00000527276 913 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 AP005901.4-201ENST00000577336 569 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 MIR4738-201ENST00000579134 87 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 MIR4429-201ENST00000580105 73 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 BNIP3P33-201ENST00000598912 569 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 AC112230.1-201ENST00000604342 547 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 AP003117.2-201ENST00000606010 545 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 AC055764.2-201ENST00000610089 670 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
HLA-DMBP28068 AL392048.1-201ENST00000613946 534 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 XIST_intron.1-201ENST00000619444 68 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 CR392039.5-201ENST00000623201 510 ntBASIC2.78□□□□□ -1.96
HLA-DMBP28068 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HLA-DMBP28068 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HLA-DMBP28068 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.78□□□□□ -1.96
HLA-DMBP28068 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HLA-DMBP28068 AL353743.4-201ENST00000422653 1547 ntBASIC2.78□□□□□ -1.97
HLA-DMBP28068 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.78□□□□□ -1.97
HLA-DMBP28068 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AL359715.4-201ENST00000606629 1436 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 ZNF542P-204ENST00000482727 1305 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AP001148.1-201ENST00000624124 2359 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 MIR670-201ENST00000390142 98 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC004022.2-201ENST00000413824 193 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 PRELID3BP11-201ENST00000414230 479 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC018644.1-201ENST00000429934 551 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC074367.1-201ENST00000438685 1125 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 TXNP1-201ENST00000441872 371 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AL353898.1-201ENST00000444055 238 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 RPL23AP44-201ENST00000482216 473 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 RPL30P11-201ENST00000495304 339 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 FTH1P24-201ENST00000503502 462 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 ARL2BPP6-201ENST00000512757 439 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC093853.1-201ENST00000515689 483 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC093331.1-201ENST00000521474 169 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AL139174.1-201ENST00000531489 886 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AL121766.1-201ENST00000547436 487 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC006270.2-201ENST00000578523 652 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 MIR4425-201ENST00000580572 84 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC007687.1-201ENST00000602704 304 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 RMST_8.1-201ENST00000610287 165 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC2.77□□□□□ -1.97
HLA-DMBP28068 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 MIR7973-1-201ENST00000614683 76 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 AC092326.2-201ENST00000624772 1561 ntBASIC2.77□□□□□ -1.97
HLA-DMBP28068 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HLA-DMBP28068 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
HLA-DMBP28068 RNA5SP235-201ENST00000365411 114 ntBASIC2.76□□□□□ -1.97
HLA-DMBP28068 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 AL136116.1-201ENST00000403591 381 ntBASIC2.76□□□□□ -1.97
HLA-DMBP28068 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
HLA-DMBP28068 RPS15AP6-201ENST00000420703 385 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms