Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC080188.3-201ENST00000624842 748 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AL590396.2-201ENST00000636511 1041 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
SKA3Q8IX90 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC090229.1-201ENST00000590983 1609 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 CASC19-261ENST00000641853 1638 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 RNU6-354P-201ENST00000383862 107 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RNU6-610P-201ENST00000384264 107 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RPL22P22-201ENST00000395439 379 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 HMGB3P19-201ENST00000403971 560 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RAB28P1-201ENST00000411517 641 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AL031736.2-201ENST00000426573 787 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 HMGB3P5-201ENST00000428894 612 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 IFNNP1-201ENST00000429219 553 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RPS7P5-201ENST00000441482 581 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AL096829.2-201ENST00000446582 742 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AL096803.2-201ENST00000450032 677 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RPS11P1-201ENST00000451072 473 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 RN7SL93P-201ENST00000463035 293 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC104629.1-201ENST00000494226 508 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 IGBP1P5-201ENST00000507524 1000 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC092593.2-201ENST00000513866 913 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 MTCO3P27-201ENST00000514397 196 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 MTCO1P35-201ENST00000515270 228 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC008562.1-201ENST00000521763 330 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 COX6B1P6-201ENST00000522347 255 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC010306.1-201ENST00000523223 1117 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC139103.1-201ENST00000534696 1030 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 OR4U1P-201ENST00000554958 912 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC022968.1-201ENST00000567372 442 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC136624.4-201ENST00000573044 370 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 MIR3908-201ENST00000579798 126 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 NTAN1P1-201ENST00000603150 646 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AP002371.2-201ENST00000624450 503 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 AC016717.3-201ENST00000624730 554 ntBASIC3.52□□□□□ -1.85
SKA3Q8IX90 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
SKA3Q8IX90 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.52□□□□□ -1.85
SKA3Q8IX90 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AP002784.2-201ENST00000397300 549 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 RPL21P65-201ENST00000406094 466 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 MIR1251-201ENST00000408552 70 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 RNU4-6P-201ENST00000410804 122 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC092745.2-202ENST00000411880 369 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 RPS27AP12-201ENST00000429552 465 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC091390.1-201ENST00000433904 331 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 OR4C10P-201ENST00000434991 931 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 ELOCP11-201ENST00000436690 332 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 VN1R25P-201ENST00000443385 738 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 ELOCP16-201ENST00000444494 332 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 DNAJC19P8-201ENST00000452887 259 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 VN1R40P-201ENST00000455196 941 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.51□□□□□ -1.85
SKA3Q8IX90 RPL7P47-201ENST00000497299 556 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC016550.1-201ENST00000505348 785 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 NAMPTP2-201ENST00000505629 1115 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 BTF3L4P4-201ENST00000506381 449 ntBASIC3.51□□□□□ -1.85
SKA3Q8IX90 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms