Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL163973.1-201ENST00000484753 577 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 EIF4EP3-201ENST00000498782 656 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC093677.1-201ENST00000514414 678 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC112206.3-201ENST00000514578 389 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 WBP1LP3-201ENST00000523033 208 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 PCNAP4-201ENST00000532690 730 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 CYCSP28-201ENST00000534284 321 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC068831.4-201ENST00000556118 109 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC068714.1-201ENST00000559623 800 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 MIR3171-201ENST00000584270 74 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC021646.1-201ENST00000605469 484 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AL139099.4-201ENST00000614802 114 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AL354950.2-201ENST00000617939 290 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 MFSD8-239ENST00000641590 2479 ntBASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
UBE3DQ7Z6J8 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LINC02019-201ENST00000608605 2060 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.144-201ENST00000363521 113 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.184-201ENST00000363884 108 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.202-201ENST00000364083 110 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RN7SKP78-201ENST00000364711 318 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 SNORD42.2-201ENST00000365570 69 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 SNORA32.2-201ENST00000384049 122 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RNU6-441P-201ENST00000384545 106 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MIR559-201ENST00000385188 96 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 ARF4P3-201ENST00000397387 509 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RPL7P60-201ENST00000397636 735 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RNU2-18P-201ENST00000411224 162 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL645937.1-202ENST00000421799 937 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 BX323845.3-201ENST00000428215 527 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RPL12P16-201ENST00000431098 498 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MTND3P2-201ENST00000438452 342 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC023141.8-201ENST00000442554 208 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC006480.1-201ENST00000449887 378 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 CACYBPP2-201ENST00000453625 678 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL133244.1-201ENST00000456007 258 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL122020.1-201ENST00000472287 459 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC006539.1-201ENST00000481419 501 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC107934.1-201ENST00000522215 217 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 SUB1P1-201ENST00000524415 382 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 TRIM77BP-201ENST00000524985 1119 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC126615.2-201ENST00000553003 515 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 LARP7P2-201ENST00000575306 125 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC098848.2-201ENST00000588023 330 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RPL23AP92-201ENST00000603609 255 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 Z84480.1-201ENST00000605131 311 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC010205.1-201ENST00000616668 449 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MTCO1P9-201ENST00000505577 1534 ntBASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
UBE3DQ7Z6J8 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.55□□□□□ -1.52
UBE3DQ7Z6J8 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 190.6 ms