Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHD3Q12873 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CHD3Q12873 Y_RNA.510-201ENST00000384511 114 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 HLFP1-201ENST00000402375 499 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 U3.39-201ENST00000408569 239 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 RNA5SP120-201ENST00000410900 112 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AC017079.2-201ENST00000416102 485 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 MOB1AP1-201ENST00000430903 535 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 MTND4LP12-201ENST00000448237 295 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 RN7SKP209-201ENST00000516888 304 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.1□□□□□ -1.91
CHD3Q12873 AP006245.1-201ENST00000522549 120 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CHD3Q12873 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.1□□□□□ -1.91
CHD3Q12873 AC010680.3-201ENST00000604215 520 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AL137843.1-201ENST00000605078 385 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AC008121.2-201ENST00000614647 523 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AP000553.6-201ENST00000641242 118 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHD3Q12873 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.09□□□□□ -1.91
CHD3Q12873 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 RN7SKP53-201ENST00000411337 315 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 CYCSP4-201ENST00000429682 331 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AC005019.1-201ENST00000436455 431 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.09□□□□□ -1.91
CHD3Q12873 AC010342.1-201ENST00000514047 877 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.09□□□□□ -1.91
CHD3Q12873 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.09□□□□□ -1.91
CHD3Q12873 AL845331.3-202ENST00000562856 261 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AC079880.2-201ENST00000603790 1213 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AC012531.5-201ENST00000611375 151 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AL354976.1-201ENST00000613843 387 ntBASIC3.09□□□□□ -1.91
CHD3Q12873 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
CHD3Q12873 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
CHD3Q12873 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CHD3Q12873 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CHD3Q12873 AL136964.1-201ENST00000622038 2990 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CHD3Q12873 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.92
CHD3Q12873 FRG1CP-201ENST00000358464 769 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 RNU1-33P-201ENST00000364249 162 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CHD3Q12873 DBIP2-201ENST00000419076 262 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 AL591419.1-201ENST00000427423 339 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 RPL12P46-201ENST00000436610 195 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
CHD3Q12873 RPS29P31-201ENST00000446147 164 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 AL133162.1-201ENST00000463228 453 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 AC087385.1-201ENST00000475062 312 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.09□□□□□ -1.92
CHD3Q12873 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.92
CHD3Q12873 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CHD3Q12873 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.09□□□□□ -1.92
CHD3Q12873 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.09□□□□□ -1.92
CHD3Q12873 AL513477.2-201ENST00000607858 568 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 AC103710.3-201ENST00000608157 948 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 AL592295.2-201ENST00000612578 206 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.09□□□□□ -1.92
CHD3Q12873 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.09□□□□□ -1.92
CHD3Q12873 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.08□□□□□ -1.92
CHD3Q12873 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.08□□□□□ -1.92
CHD3Q12873 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
CHD3Q12873 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CHD3Q12873 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 OR5AW1P-201ENST00000426334 1006 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 ATP5JP1-201ENST00000431631 322 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.08□□□□□ -1.92
CHD3Q12873 RPL21P13-201ENST00000488305 481 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.08□□□□□ -1.92
CHD3Q12873 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.08□□□□□ -1.92
CHD3Q12873 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.08□□□□□ -1.92
CHD3Q12873 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 MIR5186-201ENST00000577504 120 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.08□□□□□ -1.92
CHD3Q12873 AC006254.3-201ENST00000603353 884 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 SNORA62.6-201ENST00000606322 83 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 ZNF542P-204ENST00000482727 1305 ntBASIC3.08□□□□□ -1.92
CHD3Q12873 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CHD3Q12873 AC058791.1-201ENST00000608412 3198 ntBASIC3.07□□□□□ -1.92
CHD3Q12873 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CHD3Q12873 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
CHD3Q12873 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms