Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.33□□□□□ -1.88
USF1P22415 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 RAB9AP1-201ENST00000449393 573 ntBASIC3.33□□□□□ -1.88
USF1P22415 RPS11P1-201ENST00000451072 473 ntBASIC3.33□□□□□ -1.88
USF1P22415 HMGB3P22-202ENST00000451823 572 ntBASIC3.33□□□□□ -1.88
USF1P22415 PPIAP15-201ENST00000479662 484 ntBASIC3.33□□□□□ -1.88
USF1P22415 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 RN7SL271P-201ENST00000487601 295 ntBASIC3.33□□□□□ -1.88
USF1P22415 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 AC090071.1-201ENST00000507713 644 ntBASIC3.33□□□□□ -1.88
USF1P22415 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 KRT19P6-201ENST00000510983 209 ntBASIC3.33□□□□□ -1.88
USF1P22415 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 RNU7-143P-201ENST00000516781 65 ntBASIC3.33□□□□□ -1.88
USF1P22415 RNA5SP179-201ENST00000517284 121 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.33□□□□□ -1.88
USF1P22415 AC008562.1-201ENST00000521763 330 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.33□□□□□ -1.88
USF1P22415 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.33□□□□□ -1.88
USF1P22415 AL360157.1-201ENST00000565962 87 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC3.33□□□□□ -1.88
USF1P22415 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 HMGB1P50-201ENST00000605814 607 ntBASIC3.33□□□□□ -1.88
USF1P22415 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 AC128687.2-201ENST00000609657 566 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC025016.1-201ENST00000616746 682 ntBASIC3.33□□□□□ -1.88
USF1P22415 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 MAPK10-253ENST00000641010 4072 ntBASIC3.33□□□□□ -1.88
USF1P22415 AP002001.2-201ENST00000529025 1469 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC066616.2-201ENST00000559334 1481 ntBASIC3.33□□□□□ -1.88
USF1P22415 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
USF1P22415 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 SNORA63.1-201ENST00000362493 131 ntBASIC3.32□□□□□ -1.88
USF1P22415 RNA5SP124-201ENST00000362739 110 ntBASIC3.32□□□□□ -1.88
USF1P22415 RNA5SP387-201ENST00000364226 106 ntBASIC3.32□□□□□ -1.88
USF1P22415 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 HMGB1P10-201ENST00000395823 563 ntBASIC3.32□□□□□ -1.88
USF1P22415 TAF9BP2-201ENST00000400856 499 ntBASIC3.32□□□□□ -1.88
USF1P22415 ZNF602P-201ENST00000405929 924 ntBASIC3.32□□□□□ -1.88
USF1P22415 MTATP6P31-201ENST00000406985 692 ntBASIC3.32□□□□□ -1.88
USF1P22415 RNU2-17P-201ENST00000410290 190 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 PRELID3BP11-201ENST00000414230 479 ntBASIC3.32□□□□□ -1.88
USF1P22415 XKRYP4-201ENST00000414395 483 ntBASIC3.32□□□□□ -1.88
USF1P22415 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 MTND4P24-201ENST00000424002 397 ntBASIC3.32□□□□□ -1.88
USF1P22415 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 AC008065.1-201ENST00000428525 348 ntBASIC3.32□□□□□ -1.88
USF1P22415 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 TPTE2P3-201ENST00000441562 1189 ntBASIC3.32□□□□□ -1.88
USF1P22415 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 RPL6P5-201ENST00000445678 828 ntBASIC3.32□□□□□ -1.88
USF1P22415 XKRYP5-201ENST00000449659 483 ntBASIC3.32□□□□□ -1.88
USF1P22415 MTND5P8-201ENST00000449817 1083 ntBASIC3.32□□□□□ -1.88
USF1P22415 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 RPL21P11-201ENST00000461458 483 ntBASIC3.32□□□□□ -1.88
USF1P22415 RPS20P21-201ENST00000466859 343 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.32□□□□□ -1.88
USF1P22415 RPL7P49-201ENST00000471402 708 ntBASIC3.32□□□□□ -1.88
USF1P22415 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC004923.2-201ENST00000529649 369 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USF1P22415 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.32□□□□□ -1.88
USF1P22415 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.32□□□□□ -1.88
USF1P22415 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.32□□□□□ -1.88
USF1P22415 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.32□□□□□ -1.88
USF1P22415 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.32□□□□□ -1.88
USF1P22415 AC079610.2-201ENST00000604818 690 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC114878.2-201ENST00000604863 1251 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC091167.4-201ENST00000605079 184 ntBASIC3.32□□□□□ -1.88
USF1P22415 KATNBL1P1-201ENST00000605192 748 ntBASIC3.32□□□□□ -1.88
USF1P22415 AC005972.3-201ENST00000606304 481 ntBASIC3.32□□□□□ -1.88
USF1P22415 AL355802.4-201ENST00000607635 548 ntBASIC3.32□□□□□ -1.88
USF1P22415 AL391497.1-201ENST00000608671 547 ntBASIC3.32□□□□□ -1.88
USF1P22415 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.32□□□□□ -1.88
USF1P22415 AC084757.4-201ENST00000616350 526 ntBASIC3.32□□□□□ -1.88
USF1P22415 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.32□□□□□ -1.88
USF1P22415 FP236240.3-201ENST00000623061 327 ntBASIC3.32□□□□□ -1.88
USF1P22415 MTND4P10-201ENST00000446199 1363 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms