Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 XIAPP3-201ENST00000312918 795 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 SNORD81.1-201ENST00000363064 77 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 U3.7-201ENST00000363668 216 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 Y_RNA.199-201ENST00000364014 102 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 RNA5SP172-201ENST00000365061 118 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
COL9A1P20849 AL590635.1-201ENST00000406314 586 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AL663061.1-201ENST00000416625 580 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.98□□□□□ -1.29
COL9A1P20849 RPL23AP38-201ENST00000423801 469 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 RPL7AP14-201ENST00000424041 802 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AL353997.1-201ENST00000432936 108 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 OR4C10P-201ENST00000434991 931 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AL445928.1-201ENST00000435545 222 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 RN7SL654P-201ENST00000479178 292 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 AP002453.1-201ENST00000492327 668 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AC008716.1-201ENST00000511084 513 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC6.98□□□□□ -1.29
COL9A1P20849 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 RNU6-64P-201ENST00000517119 105 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 IGKV2-23-201ENST00000518729 323 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.98□□□□□ -1.29
COL9A1P20849 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.98□□□□□ -1.29
COL9A1P20849 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.98□□□□□ -1.29
COL9A1P20849 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.98□□□□□ -1.29
COL9A1P20849 AC008162.1-201ENST00000604718 254 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AL670379.4-201ENST00000605279 254 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 DLEU2_2.2-201ENST00000615474 90 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 AC021753.1-201ENST00000635724 168 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC6.98□□□□□ -1.29
COL9A1P20849 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
COL9A1P20849 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 AC130650.2-201ENST00000618736 2403 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
COL9A1P20849 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 AC022034.1-201ENST00000512867 2156 ntBASIC6.98□□□□□ -1.29
COL9A1P20849 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
COL9A1P20849 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL9A1P20849 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.97□□□□□ -1.29
COL9A1P20849 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 CORIN-202ENST00000502252 3112 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 DLEU2L-201ENST00000371086 3555 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 RNU6-1266P-201ENST00000362794 105 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 RNU6-1290P-201ENST00000362957 109 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 RNU6-682P-201ENST00000363843 106 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 RNY3P11-201ENST00000364153 102 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 RNU6-174P-201ENST00000410406 106 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 SYF2P2-201ENST00000417620 583 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC6.97□□□□□ -1.29
COL9A1P20849 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC6.97□□□□□ -1.29
COL9A1P20849 GAPDHP20-201ENST00000444107 1007 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 RPL36AP39-201ENST00000445859 318 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 PPIAP27-201ENST00000453800 265 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 PLGLA-201ENST00000465668 449 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
COL9A1P20849 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.97□□□□□ -1.29
COL9A1P20849 AC093767.1-201ENST00000504523 156 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC6.97□□□□□ -1.29
COL9A1P20849 OR51K1P-201ENST00000510214 950 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC092436.3-201ENST00000511788 257 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 AP003396.4-201ENST00000527574 265 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 AC036111.2-201ENST00000533247 901 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 DPPA3P2-201ENST00000553589 478 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC013283.1-201ENST00000557282 492 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.97□□□□□ -1.29
COL9A1P20849 AC093799.2-201ENST00000610062 578 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 RN7SL787P-201ENST00000613000 284 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC073488.2-201ENST00000631903 751 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.97□□□□□ -1.29
COL9A1P20849 AL034408.1-201ENST00000637712 664 ntBASIC6.97□□□□□ -1.29
COL9A1P20849 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 RETREG1-202ENST00000399793 3145 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL9A1P20849 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms