Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-1176P-201ENST00000390955 107 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AL024507.1-201ENST00000412741 274 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC246680.2-201ENST00000422106 389 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC241520.1-201ENST00000422654 1099 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC093698.1-201ENST00000423843 571 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AC016712.1-201ENST00000431088 378 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 PPIAP17-201ENST00000438507 471 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AC000041.1-201ENST00000439655 175 ntBASIC3.65□□□□□ -1.83
SDC1P18827 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 UBE2V1P5-201ENST00000440070 405 ntBASIC3.65□□□□□ -1.83
SDC1P18827 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.65□□□□□ -1.83
SDC1P18827 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 MTND1P33-201ENST00000446251 917 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AL929288.2-201ENST00000446368 407 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC005002.1-201ENST00000447458 540 ntBASIC3.65□□□□□ -1.83
SDC1P18827 RPL7P31-201ENST00000450192 724 ntBASIC3.65□□□□□ -1.83
SDC1P18827 NDUFS5P3-201ENST00000450668 321 ntBASIC3.65□□□□□ -1.83
SDC1P18827 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.65□□□□□ -1.83
SDC1P18827 RPL5P32-201ENST00000454085 879 ntBASIC3.65□□□□□ -1.83
SDC1P18827 DNAJC19P1-201ENST00000455312 319 ntBASIC3.65□□□□□ -1.83
SDC1P18827 RPS23P7-201ENST00000466210 444 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC010307.1-201ENST00000467206 836 ntBASIC3.65□□□□□ -1.83
SDC1P18827 MTATP6P22-201ENST00000507369 598 ntBASIC3.65□□□□□ -1.83
SDC1P18827 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.65□□□□□ -1.83
SDC1P18827 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.65□□□□□ -1.83
SDC1P18827 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AP003102.1-201ENST00000525638 661 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AP003066.2-201ENST00000529375 555 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.65□□□□□ -1.83
SDC1P18827 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.65□□□□□ -1.83
SDC1P18827 AP000919.1-202ENST00000581139 1264 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AL136370.1-201ENST00000608166 691 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.65□□□□□ -1.83
SDC1P18827 AC079684.1-201ENST00000621405 437 ntBASIC3.65□□□□□ -1.83
SDC1P18827 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 PNPT1P2-201ENST00000456768 2050 ntBASIC3.65□□□□□ -1.83
SDC1P18827 AC006504.1-201ENST00000562493 3666 ntBASIC3.65□□□□□ -1.83
SDC1P18827 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SDC1P18827 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
SDC1P18827 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.65□□□□□ -1.83
SDC1P18827 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SDC1P18827 ASNSP1-204ENST00000641977 1664 ntBASIC3.65□□□□□ -1.83
SDC1P18827 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 AC007529.1-201ENST00000418574 2178 ntBASIC3.64□□□□□ -1.83
SDC1P18827 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
SDC1P18827 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 RPS26P8-201ENST00000393490 348 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AL355615.1-201ENST00000406187 641 ntBASIC3.64□□□□□ -1.83
SDC1P18827 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.64□□□□□ -1.83
SDC1P18827 AL450992.3-201ENST00000413192 568 ntBASIC3.64□□□□□ -1.83
SDC1P18827 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC013262.1-201ENST00000426710 252 ntBASIC3.64□□□□□ -1.83
SDC1P18827 RPS7P2-201ENST00000435134 607 ntBASIC3.64□□□□□ -1.83
SDC1P18827 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.64□□□□□ -1.83
SDC1P18827 SNORA71B-202ENST00000439232 272 ntBASIC3.64□□□□□ -1.83
SDC1P18827 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.64□□□□□ -1.83
SDC1P18827 EXTL2P1-201ENST00000446218 416 ntBASIC3.64□□□□□ -1.83
SDC1P18827 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.64□□□□□ -1.83
SDC1P18827 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.64□□□□□ -1.83
SDC1P18827 RPS17P11-201ENST00000474297 293 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.64□□□□□ -1.83
SDC1P18827 AC015724.1-201ENST00000478577 156 ntBASIC3.64□□□□□ -1.83
SDC1P18827 RPS3AP6-201ENST00000484430 795 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.64□□□□□ -1.83
SDC1P18827 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.64□□□□□ -1.83
SDC1P18827 MTND5P21-201ENST00000531961 522 ntBASIC3.64□□□□□ -1.83
SDC1P18827 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.64□□□□□ -1.83
SDC1P18827 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.64□□□□□ -1.83
SDC1P18827 RFPL1S-203ENST00000539579 330 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AL442163.2-201ENST00000553912 710 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.64□□□□□ -1.83
SDC1P18827 AC023825.1-201ENST00000566704 1030 ntBASIC3.64□□□□□ -1.83
SDC1P18827 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.64□□□□□ -1.83
SDC1P18827 DNAJC19P3-201ENST00000594491 331 ntBASIC3.64□□□□□ -1.83
SDC1P18827 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 AC133794.1-201ENST00000602731 914 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AP002906.1-201ENST00000603405 233 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.64□□□□□ -1.83
SDC1P18827 AL592436.1-201ENST00000605135 558 ntBASIC3.64□□□□□ -1.83
SDC1P18827 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 AC000123.2-201ENST00000623124 461 ntBASIC3.64□□□□□ -1.83
SDC1P18827 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
SDC1P18827 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SDC1P18827 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms