Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA3O43365 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA3O43365 PMCHL2-203ENST00000457791 237 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC087879.1-201ENST00000474343 374 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 RPL38P3-201ENST00000484463 213 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA3O43365 MIR2117-201ENST00000516780 80 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC139365.2-201ENST00000517972 253 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 CBX3P5-201ENST00000552017 521 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 SUB1P2-201ENST00000556401 297 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC090651.1-201ENST00000567865 634 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA3O43365 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXA3O43365 AL353997.4-201ENST00000586196 166 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 AC019193.2-201ENST00000610012 634 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC069234.4-201ENST00000621276 412 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AC006065.6-201ENST00000625201 545 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 AP004607.3-201ENST00000530354 3915 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXA3O43365 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.62□□□□□ -1.67
HOXA3O43365 AC130304.1-201ENST00000622942 2385 ntBASIC4.62□□□□□ -1.67
HOXA3O43365 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXA3O43365 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
HOXA3O43365 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXA3O43365 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 AL034546.1-201ENST00000623740 3693 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 AC092070.2-203ENST00000598377 3644 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
HOXA3O43365 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 FRG1BP-201ENST00000278882 761 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AL159987.1-201ENST00000347911 293 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 RNA5SP391-201ENST00000363456 119 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 MT-TD-201ENST00000387419 68 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 AL354868.1-201ENST00000417077 482 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC013429.2-201ENST00000418798 781 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 OR10T1P-201ENST00000424327 947 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC234779.1-201ENST00000425910 285 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 RWDD4P2-201ENST00000426392 563 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA3O43365 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 AL136380.1-201ENST00000447970 162 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 OR2AO1P-201ENST00000476497 403 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 RPL36AP51-201ENST00000487216 318 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC079382.1-201ENST00000493346 557 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA3O43365 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 RNA5SP34-201ENST00000516887 130 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA3O43365 AP000859.1-201ENST00000525536 307 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 CENPUP1-201ENST00000526649 1202 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXA3O43365 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXA3O43365 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 MIR3167-201ENST00000579623 85 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 MIR1269B-201ENST00000580405 75 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 MIR3118-1-201ENST00000581787 76 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC068790.5-201ENST00000602741 355 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AL035413.2-201ENST00000604801 525 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC211433.2-201ENST00000608433 387 ntBASIC4.61□□□□□ -1.67
HOXA3O43365 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXA3O43365 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXA3O43365 AC093788.1-201ENST00000609356 927 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 156.4 ms