Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL807761.1-201ENST00000417622 171 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 MTND2P16-201ENST00000419987 799 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 MTCYBP24-201ENST00000420387 1106 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 RPL23AP38-201ENST00000423801 469 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 ETF1P3-201ENST00000430422 1160 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 PTP4A1P3-201ENST00000433661 420 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 ATP5HP2-201ENST00000433885 485 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 YWHAZP8-201ENST00000436935 731 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 FABP5P3-201ENST00000437960 408 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL356535.1-201ENST00000440335 398 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 CYCSP53-201ENST00000455540 265 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL133477.1-201ENST00000457472 514 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 UQCRHP4-201ENST00000471686 272 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 OR8K2P-201ENST00000524645 927 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 SNRPGP15-201ENST00000600149 222 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC112230.1-201ENST00000604342 547 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL009028.1-201ENST00000604895 802 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC114781.5-201ENST00000615297 108 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 FRG1HP-204ENST00000617940 757 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 MIR8059-201ENST00000620427 81 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC011944.2-201ENST00000624440 683 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 AL590396.2-201ENST00000636511 1041 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS39Q96JC1 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS39Q96JC1 AC083899.2-201ENST00000423285 1376 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 ELL2P4-201ENST00000446870 1376 ntBASIC4.01□□□□□ -1.77
VPS39Q96JC1 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4□□□□□ -1.77
VPS39Q96JC1 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 RPL7AP73-201ENST00000413490 353 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4□□□□□ -1.77
VPS39Q96JC1 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 RPL23AP62-201ENST00000463396 453 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 AC091167.1-201ENST00000492017 396 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 RPS27AP13-201ENST00000498403 237 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AC104108.1-201ENST00000509930 412 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AC025768.1-201ENST00000510057 267 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 RNU6-1102P-201ENST00000516149 96 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC008687.2-201ENST00000597865 520 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AC103710.3-201ENST00000608157 948 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AL136295.6-201ENST00000610486 658 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AL139089.1-201ENST00000620372 975 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 AC124312.6-202ENST00000623624 418 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 AL109659.3-201ENST00000624985 950 ntBASIC4□□□□□ -1.77
VPS39Q96JC1 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS39Q96JC1 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4□□□□□ -1.77
VPS39Q96JC1 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4□□□□□ -1.77
VPS39Q96JC1 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 UBE3AP2-201ENST00000429033 2259 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 RNU11-4P-201ENST00000391149 133 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 HMGB3P19-201ENST00000403971 560 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 RNU6-272P-201ENST00000411028 104 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 HSPE1P12-201ENST00000412576 301 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AMD1P2-201ENST00000412936 992 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 RPL31P2-201ENST00000413849 377 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms