Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC024595.1-201ENST00000623088 387 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC112484.5-201ENST00000624189 228 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 CDRT1-208ENST00000630868 794 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 OR5BE1P-202ENST00000641168 1176 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 NCAPGP1-201ENST00000505112 1814 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL136964.1-201ENST00000622038 2990 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SKA3Q8IX90 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 ENSAP3-201ENST00000312710 333 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 SNORA70.2-201ENST00000364506 135 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 MTCO1P54-201ENST00000430139 712 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 RNU7-170P-201ENST00000459303 61 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC010342.1-201ENST00000514047 877 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC090079.2-201ENST00000575289 768 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 NF1P5-201ENST00000588287 448 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC125494.3-201ENST00000602759 455 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 RNU4-89P-201ENST00000607443 133 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC021851.1-201ENST00000608537 1082 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 MIR6868-201ENST00000611215 58 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL773545.4-201ENST00000637262 310 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL513478.4-201ENST00000641636 310 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SKA3Q8IX90 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL592494.2-201ENST00000425455 1548 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AC066616.2-201ENST00000559334 1481 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.54□□□□□ -1.84
SKA3Q8IX90 AL118496.1-201ENST00000440201 1812 ntBASIC3.54□□□□□ -1.84
SKA3Q8IX90 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RLIMP1-201ENST00000339626 1680 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 SEC63P2-201ENST00000503863 1939 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RNA5SP317-201ENST00000410176 116 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 RNA5SP311-201ENST00000411290 116 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 RPL30P2-201ENST00000414021 291 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC073310.1-201ENST00000423226 1033 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC006994.1-201ENST00000438212 839 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AL158053.1-201ENST00000441503 453 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC114755.5-201ENST00000447760 831 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RPL37P3-201ENST00000456825 293 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RN7SL860P-201ENST00000473738 223 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC087385.1-201ENST00000475062 312 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC092902.1-201ENST00000486999 259 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 RN7SL271P-201ENST00000487601 295 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AL035404.1-201ENST00000497982 568 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 RNA5SP315-201ENST00000516340 116 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 RNA5SP312-201ENST00000517068 116 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SKA3Q8IX90 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC027104.1-201ENST00000563702 681 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC124283.4-201ENST00000581815 456 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 RN7SL622P-201ENST00000585292 275 ntBASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.53□□□□□ -1.84
SKA3Q8IX90 AC096586.1-201ENST00000610267 561 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms