Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC109327.1-201ENST00000471666 403 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 GAPDHP39-201ENST00000481866 979 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC013356.1-201ENST00000489027 564 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC048346.1-201ENST00000510247 144 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP43-201ENST00000516559 110 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RPL21P7-201ENST00000557463 483 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC087477.6-201ENST00000559595 843 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AADACP1-206ENST00000561502 1193 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 SNORA74C-1-201ENST00000580726 201 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC091057.2-201ENST00000602594 792 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC024220.1-201ENST00000603675 484 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL121873.1-201ENST00000616013 524 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AC006133.1-201ENST00000617106 264 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AP000676.4-201ENST00000624659 623 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 AL049536.1-201ENST00000625043 744 ntBASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PDLIM3Q53GG5 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC105074.1-201ENST00000623380 3095 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 ERCC6-202ENST00000374127 1782 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 ZFRP1-201ENST00000457579 2970 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 HMGB1P5-201ENST00000255320 642 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL512646.1-201ENST00000269395 1077 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 OR4K15-201ENST00000305051 1216 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 Z97832.1-201ENST00000402490 328 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 PRRC2CP1-201ENST00000404428 159 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC004987.3-201ENST00000413879 771 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC007559.1-201ENST00000428736 355 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 VN1R34P-201ENST00000447387 883 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 PPIAP3-201ENST00000450588 505 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 NDUFA5P7-201ENST00000452914 242 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 NECAP1P2-201ENST00000455668 727 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 RPL23AP65-201ENST00000475608 468 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 DEFB109F-201ENST00000491870 277 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 RN7SL244P-201ENST00000493405 297 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC104971.1-201ENST00000495117 578 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 DSTNP2-201ENST00000504533 515 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 RNU6-885P-201ENST00000516607 104 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MIR2116-201ENST00000517221 80 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 RNU6-709P-201ENST00000517257 104 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 HIGD1AP6-201ENST00000521833 279 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC023538.1-201ENST00000534576 736 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MTND4P33-201ENST00000556706 766 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC005255.1-201ENST00000593748 216 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AP003973.1-201ENST00000604639 691 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC010424.2-201ENST00000607594 443 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AP004247.3-201ENST00000608682 624 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC092106.3-201ENST00000611308 722 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL627230.1-201ENST00000613077 211 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC105227.2-201ENST00000615075 605 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL591926.8-201ENST00000616876 211 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AL355493.4-201ENST00000618530 292 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 C2orf27A-204ENST00000623058 969 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 CR381572.2-201ENST00000624852 397 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 Z99496.1-201ENST00000469424 1477 ntBASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
PDLIM3Q53GG5 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms