Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 AC009902.3-201ENST00000606235 2172 ntBASIC6.06□□□□□ -1.44
MSX1P28360 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSX1P28360 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 RNU6-97P-201ENST00000363387 104 ntBASIC6.06□□□□□ -1.44
MSX1P28360 RNA5SP232-201ENST00000364144 119 ntBASIC6.06□□□□□ -1.44
MSX1P28360 RN7SKP269-201ENST00000365545 319 ntBASIC6.06□□□□□ -1.44
MSX1P28360 Y_RNA.389-201ENST00000383924 113 ntBASIC6.06□□□□□ -1.44
MSX1P28360 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
MSX1P28360 RN7SKP86-201ENST00000410454 332 ntBASIC6.06□□□□□ -1.44
MSX1P28360 POLHP1-201ENST00000411806 470 ntBASIC6.06□□□□□ -1.44
MSX1P28360 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 MTATP6P29-201ENST00000415057 132 ntBASIC6.06□□□□□ -1.44
MSX1P28360 RPL31P45-201ENST00000419532 356 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AC048351.1-201ENST00000420064 602 ntBASIC6.06□□□□□ -1.44
MSX1P28360 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 OR2AS1P-201ENST00000427827 319 ntBASIC6.06□□□□□ -1.44
MSX1P28360 PSMA6P3-201ENST00000428242 164 ntBASIC6.06□□□□□ -1.44
MSX1P28360 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX1P28360 AL590233.1-201ENST00000430017 456 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL590399.4-201ENST00000436561 601 ntBASIC6.06□□□□□ -1.44
MSX1P28360 YWHAZP8-201ENST00000436935 731 ntBASIC6.06□□□□□ -1.44
MSX1P28360 UBE2V1P13-201ENST00000436983 439 ntBASIC6.06□□□□□ -1.44
MSX1P28360 FABP5P2-201ENST00000439042 408 ntBASIC6.06□□□□□ -1.44
MSX1P28360 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.06□□□□□ -1.44
MSX1P28360 RPL21P133-201ENST00000443666 476 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AC016724.1-201ENST00000453215 421 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AC079804.1-201ENST00000461922 436 ntBASIC6.06□□□□□ -1.44
MSX1P28360 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC6.06□□□□□ -1.44
MSX1P28360 RNU6-1016P-201ENST00000516689 94 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC6.06□□□□□ -1.44
MSX1P28360 AC068993.1-201ENST00000546724 589 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.06□□□□□ -1.44
MSX1P28360 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 RN7SL230P-201ENST00000580835 303 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL359704.2-201ENST00000604335 521 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AC139493.1-201ENST00000604368 397 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL499605.1-201ENST00000604628 403 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL354984.3-201ENST00000604803 325 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AP001486.3-201ENST00000615334 372 ntBASIC6.06□□□□□ -1.44
MSX1P28360 PISRT1.1-201ENST00000616930 107 ntBASIC6.06□□□□□ -1.44
MSX1P28360 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC6.06□□□□□ -1.44
MSX1P28360 AL732372.2-225ENST00000642124 456 ntBASIC6.06□□□□□ -1.44
MSX1P28360 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 SMG1P5-202ENST00000529428 4219 ntBASIC6.05□□□□□ -1.44
MSX1P28360 SMG1P2-201ENST00000566127 4221 ntBASIC6.05□□□□□ -1.44
MSX1P28360 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 AC134882.1-201ENST00000603738 1676 ntBASIC6.05□□□□□ -1.44
MSX1P28360 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.05□□□□□ -1.44
MSX1P28360 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 Y_RNA.234-201ENST00000364409 97 ntBASIC6.05□□□□□ -1.44
MSX1P28360 Y_RNA.496-201ENST00000384444 101 ntBASIC6.05□□□□□ -1.44
MSX1P28360 SNORA75.6-201ENST00000391318 127 ntBASIC6.05□□□□□ -1.44
MSX1P28360 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 AL590635.1-201ENST00000406314 586 ntBASIC6.05□□□□□ -1.44
MSX1P28360 MIR1275-201ENST00000408770 80 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX1P28360 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 RPSAP35-201ENST00000413753 818 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AL359092.1-201ENST00000417156 265 ntBASIC6.05□□□□□ -1.44
MSX1P28360 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.05□□□□□ -1.44
MSX1P28360 ARL5AP4-201ENST00000430731 512 ntBASIC6.05□□□□□ -1.44
MSX1P28360 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
MSX1P28360 RPL7P28-201ENST00000437739 740 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX1P28360 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC6.05□□□□□ -1.44
MSX1P28360 RPL7P52-201ENST00000449200 742 ntBASIC6.05□□□□□ -1.44
MSX1P28360 AC108059.3-201ENST00000456388 214 ntBASIC6.05□□□□□ -1.44
MSX1P28360 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms