Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC9B1P2-201ENST00000398120 1184 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.2□□□□□ -1.58
COL3A1P02461 AL139247.1-201ENST00000422768 325 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 HSPE1P16-201ENST00000426640 348 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.2□□□□□ -1.58
COL3A1P02461 FABP5P3-201ENST00000437960 408 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 HMGB1P37-201ENST00000439613 609 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL353572.1-201ENST00000442490 417 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 AL358232.1-201ENST00000448030 501 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 RPL7P55-201ENST00000450522 746 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC092754.2-201ENST00000463506 460 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 RPS20P21-201ENST00000466859 343 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC104685.1-201ENST00000502445 371 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 ASNSP4-201ENST00000511103 447 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC116353.3-201ENST00000511215 249 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 MRPS33P3-201ENST00000513456 322 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 HMGB1P1-201ENST00000522557 636 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 AL133247.2-201ENST00000603236 482 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL606490.9-201ENST00000603331 271 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL031775.1-201ENST00000607014 887 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC015540.1-201ENST00000615828 501 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC131159.1-201ENST00000621854 213 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC007671.2-201ENST00000637344 619 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC139713.2-210ENST00000641741 992 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 AC104446.1-201ENST00000613728 1321 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 OR4A15-201ENST00000314706 1035 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 SFR1P1-201ENST00000403720 688 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 SNORA79B-201ENST00000410557 148 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 MTCO3P41-201ENST00000414801 328 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 ELOCP8-201ENST00000439309 332 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 ELOCP15-201ENST00000442090 332 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 NOTCH2P1-201ENST00000443481 624 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL3A1P02461 RPL7L1P8-201ENST00000469911 741 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 PPIAP15-201ENST00000479662 484 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 MTND2P14-201ENST00000482139 351 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC090543.1-201ENST00000492168 485 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 XKRY-201ENST00000510392 1100 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 MTND3P5-201ENST00000512798 333 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 RNA5SP208-201ENST00000516156 78 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 RNU1-45P-201ENST00000517191 141 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.2□□□□□ -1.58
COL3A1P02461 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC5.2□□□□□ -1.58
COL3A1P02461 ZDHHC20P3-201ENST00000531576 336 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 AC093014.1-201ENST00000548926 724 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.2□□□□□ -1.58
COL3A1P02461 HSPE1P5-201ENST00000561489 272 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 MIR5685-201ENST00000579080 79 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.2□□□□□ -1.58
COL3A1P02461 AP003465.2-201ENST00000602571 373 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 OR2AS2P-201ENST00000606902 342 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL096803.3-201ENST00000609032 532 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AL121772.2-201ENST00000614331 297 ntBASIC5.2□□□□□ -1.58
COL3A1P02461 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.2□□□□□ -1.58
COL3A1P02461 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 AC005005.4-201ENST00000623789 16698 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.19□□□□□ -1.58
COL3A1P02461 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.19□□□□□ -1.58
COL3A1P02461 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
COL3A1P02461 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 AL445213.1-201ENST00000412589 747 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms