Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNF126P1-202ENST00000569893 925 ntBASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 AC138894.3-201ENST00000603787 634 ntBASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC29.31■■■□□ 2.28
COL17A1Q9UMD9 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 TSPY22P-201ENST00000427496 604 ntBASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 KRT8P11-201ENST00000409686 1436 ntBASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC29.3■■■□□ 2.28
COL17A1Q9UMD9 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 AP001005.1-201ENST00000571755 1248 ntBASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 BX842568.4-201ENST00000421222 227 ntBASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC29.29■■■□□ 2.28
COL17A1Q9UMD9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 LINC01711-201ENST00000598340 967 ntBASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL17A1Q9UMD9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 KRT16P6-202ENST00000425692 1426 ntBASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC29.27■■■□□ 2.28
COL17A1Q9UMD9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 AF238378.1-201ENST00000526806 358 ntBASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL17A1Q9UMD9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 AC005104.2-201ENST00000427818 678 ntBASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 AL139424.1-201ENST00000607572 797 ntBASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC29.25■■■□□ 2.27
COL17A1Q9UMD9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC29.24■■■□□ 2.27
COL17A1Q9UMD9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC29.24■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms