Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AC117947.1-201ENST00000427448 529 ntBASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AC010653.2-201ENST00000623505 997 ntBASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
PAAF1Q9BRP4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 AC139887.4-201ENST00000607877 719 ntBASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PAAF1Q9BRP4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 BX664615.1-201ENST00000443558 458 ntBASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 TSPY17P-201ENST00000450329 467 ntBASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 AP003041.3-201ENST00000527151 707 ntBASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 AC125437.2-201ENST00000625180 2167 ntBASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.6■□□□□ 0.89
PAAF1Q9BRP4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 AK4P3-201ENST00000418260 669 ntBASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 CA15P1-201ENST00000481698 905 ntBASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.59■□□□□ 0.89
PAAF1Q9BRP4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms