Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
VMP1Q96GC9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
VMP1Q96GC9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 TCF3P1-201ENST00000423021 1937 ntBASIC18.45■□□□□ 0.54
VMP1Q96GC9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 UBE2SP1-201ENST00000450587 669 ntBASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC133681.1-201ENST00000465482 601 ntBASIC18.45■□□□□ 0.54
VMP1Q96GC9 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC124016.1-201ENST00000609552 612 ntBASIC18.45■□□□□ 0.54
VMP1Q96GC9 AP006294.2-201ENST00000641667 209 ntBASIC18.45■□□□□ 0.54
VMP1Q96GC9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.45■□□□□ 0.54
VMP1Q96GC9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VMP1Q96GC9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 BX119927.1-201ENST00000636596 1552 ntBASIC18.44■□□□□ 0.54
VMP1Q96GC9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 KRASP1-201ENST00000407852 552 ntBASIC18.44■□□□□ 0.54
VMP1Q96GC9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VMP1Q96GC9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 AC125437.2-201ENST00000625180 2167 ntBASIC18.44■□□□□ 0.54
VMP1Q96GC9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VMP1Q96GC9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VMP1Q96GC9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VMP1Q96GC9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms