Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CSPG4Q6UVK1 DPP3P2-201ENST00000416030 1696 ntBASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 BID-203ENST00000399765 1879 ntTSL 2 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 HBZP1-201ENST00000354915 429 ntBASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 NEK4P2-201ENST00000580004 1012 ntBASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 AL671883.3-201ENST00000603274 991 ntBASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSPG4Q6UVK1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 AL137060.1-201ENST00000618151 2648 ntBASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 AP002383.4-201ENST00000442518 975 ntBASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 FAAHP1-202ENST00000446499 1238 ntBASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CSPG4Q6UVK1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 SPDYE15P-201ENST00000424157 909 ntBASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 AL691432.2-201ENST00000607222 2038 ntBASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 AC007375.3-201ENST00000600936 2314 ntBASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 KRT8P41-201ENST00000533985 1514 ntBASIC15.9■□□□□ 0.14
CSPG4Q6UVK1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC15.89■□□□□ 0.14
CSPG4Q6UVK1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms