Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 PRELID1P1-202ENST00000567272 903 ntBASIC20.73■□□□□ 0.91
COL4A4P53420 RN7SL510P-201ENST00000581311 263 ntBASIC20.73■□□□□ 0.91
COL4A4P53420 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL4A4P53420 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL4A4P53420 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A4P53420 KRT8P45-201ENST00000414328 1447 ntBASIC20.72■□□□□ 0.91
COL4A4P53420 AL691432.2-201ENST00000607222 2038 ntBASIC20.72■□□□□ 0.91
COL4A4P53420 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A4P53420 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A4P53420 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 AL136038.3-201ENST00000561909 1096 ntBASIC20.72■□□□□ 0.91
COL4A4P53420 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 IFNL4P1-201ENST00000607083 540 ntBASIC20.72■□□□□ 0.91
COL4A4P53420 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.72■□□□□ 0.91
COL4A4P53420 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
COL4A4P53420 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A4P53420 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL4A4P53420 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A4P53420 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 STARP1-201ENST00000397973 869 ntBASIC20.71■□□□□ 0.91
COL4A4P53420 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.71■□□□□ 0.91
COL4A4P53420 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.71■□□□□ 0.91
COL4A4P53420 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A4P53420 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.71■□□□□ 0.91
COL4A4P53420 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL4A4P53420 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A4P53420 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A4P53420 FDX1P1-201ENST00000449115 551 ntBASIC20.7■□□□□ 0.91
COL4A4P53420 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
COL4A4P53420 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.7■□□□□ 0.91
COL4A4P53420 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.7■□□□□ 0.91
COL4A4P53420 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.7■□□□□ 0.91
COL4A4P53420 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.7■□□□□ 0.91
COL4A4P53420 HYMAI.1-201ENST00000620949 238 ntBASIC20.7■□□□□ 0.91
COL4A4P53420 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.7■□□□□ 0.91
COL4A4P53420 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
COL4A4P53420 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.7■□□□□ 0.9
COL4A4P53420 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
COL4A4P53420 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL4A4P53420 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A4P53420 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.69■□□□□ 0.9
COL4A4P53420 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.69■□□□□ 0.9
COL4A4P53420 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.69■□□□□ 0.9
COL4A4P53420 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A4P53420 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.69■□□□□ 0.9
COL4A4P53420 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL4A4P53420 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL4A4P53420 AP001271.2-201ENST00000624018 1556 ntBASIC20.69■□□□□ 0.9
COL4A4P53420 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.68■□□□□ 0.9
COL4A4P53420 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL4A4P53420 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms