Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL6A3P12111 AC007274.1-201ENST00000439805 662 ntBASIC20.22■□□□□ 0.83
COL6A3P12111 SEC1P-202ENST00000473944 940 ntBASIC20.22■□□□□ 0.83
COL6A3P12111 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A3P12111 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A3P12111 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.22■□□□□ 0.83
COL6A3P12111 FAM197Y3-203ENST00000618346 717 ntBASIC20.22■□□□□ 0.83
COL6A3P12111 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A3P12111 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.22■□□□□ 0.83
COL6A3P12111 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL6A3P12111 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A3P12111 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A3P12111 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A3P12111 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 AC099336.1-202ENST00000602961 463 ntBASIC20.21■□□□□ 0.83
COL6A3P12111 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A3P12111 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL6A3P12111 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.21■□□□□ 0.83
COL6A3P12111 Z83836.1-201ENST00000624605 1642 ntBASIC20.21■□□□□ 0.83
COL6A3P12111 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A3P12111 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A3P12111 MIR3687-2-201ENST00000577708 61 ntBASIC20.21■□□□□ 0.83
COL6A3P12111 MIR3687-1-201ENST00000614492 61 ntBASIC20.21■□□□□ 0.83
COL6A3P12111 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A3P12111 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A3P12111 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 AP006288.1-201ENST00000446065 395 ntBASIC20.2■□□□□ 0.82
COL6A3P12111 AF186996.4-201ENST00000467186 377 ntBASIC20.2■□□□□ 0.82
COL6A3P12111 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A3P12111 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A3P12111 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A3P12111 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.2■□□□□ 0.82
COL6A3P12111 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A3P12111 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A3P12111 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A3P12111 TUBB8P6-201ENST00000436895 1288 ntBASIC20.2■□□□□ 0.82
COL6A3P12111 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
COL6A3P12111 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
COL6A3P12111 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A3P12111 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.2■□□□□ 0.82
COL6A3P12111 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A3P12111 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
COL6A3P12111 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL6A3P12111 AC211486.1-202ENST00000416371 468 ntBASIC20.19■□□□□ 0.82
COL6A3P12111 AC211476.1-201ENST00000503899 468 ntBASIC20.19■□□□□ 0.82
COL6A3P12111 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.19■□□□□ 0.82
COL6A3P12111 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
COL6A3P12111 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL6A3P12111 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.19■□□□□ 0.82
COL6A3P12111 ZNF259P1-201ENST00000407656 1365 ntBASIC20.19■□□□□ 0.82
COL6A3P12111 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.19■□□□□ 0.82
COL6A3P12111 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.19■□□□□ 0.82
COL6A3P12111 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.19■□□□□ 0.82
COL6A3P12111 RNF126P1-202ENST00000569893 925 ntBASIC20.19■□□□□ 0.82
COL6A3P12111 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A3P12111 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A3P12111 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
COL6A3P12111 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A3P12111 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL6A3P12111 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.18■□□□□ 0.82
COL6A3P12111 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms