Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.23■□□□□ 0.83
APOEP02649 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
APOEP02649 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
APOEP02649 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 KSR1P1-201ENST00000446298 240 ntBASIC20.22■□□□□ 0.83
APOEP02649 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
APOEP02649 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.22■□□□□ 0.83
APOEP02649 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
APOEP02649 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
APOEP02649 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
APOEP02649 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
APOEP02649 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.21■□□□□ 0.83
APOEP02649 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
APOEP02649 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.21■□□□□ 0.83
APOEP02649 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.21■□□□□ 0.83
APOEP02649 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.21■□□□□ 0.83
APOEP02649 AC113410.3-201ENST00000623366 203 ntBASIC20.21■□□□□ 0.83
APOEP02649 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
APOEP02649 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
APOEP02649 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
APOEP02649 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.21■□□□□ 0.83
APOEP02649 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
APOEP02649 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
APOEP02649 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.2■□□□□ 0.82
APOEP02649 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
APOEP02649 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.2■□□□□ 0.82
APOEP02649 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 SNORA78-201ENST00000459373 127 ntBASIC20.2■□□□□ 0.82
APOEP02649 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.2■□□□□ 0.82
APOEP02649 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.2■□□□□ 0.82
APOEP02649 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.2■□□□□ 0.82
APOEP02649 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.2■□□□□ 0.82
APOEP02649 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
APOEP02649 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.19■□□□□ 0.82
APOEP02649 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
APOEP02649 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 FAM197Y1-201ENST00000421178 764 ntBASIC20.19■□□□□ 0.82
APOEP02649 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.19■□□□□ 0.82
APOEP02649 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.19■□□□□ 0.82
APOEP02649 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.19■□□□□ 0.82
APOEP02649 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.19■□□□□ 0.82
APOEP02649 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.19■□□□□ 0.82
APOEP02649 CD177P1-201ENST00000606252 935 ntBASIC20.19■□□□□ 0.82
APOEP02649 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
APOEP02649 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.19■□□□□ 0.82
APOEP02649 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.19■□□□□ 0.82
APOEP02649 KRT16P1-201ENST00000399124 1418 ntBASIC20.19■□□□□ 0.82
APOEP02649 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.18■□□□□ 0.82
APOEP02649 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.18■□□□□ 0.82
APOEP02649 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.18■□□□□ 0.82
APOEP02649 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms