Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LDB3O75112 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.19■□□□□ 0.5
LDB3O75112 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 SDHAP1-207ENST00000440850 2000 ntBASIC18.18■□□□□ 0.5
LDB3O75112 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB3O75112 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.18■□□□□ 0.5
LDB3O75112 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.18■□□□□ 0.5
LDB3O75112 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 CR392000.1-201ENST00000624770 1228 ntBASIC18.18■□□□□ 0.5
LDB3O75112 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.18■□□□□ 0.5
LDB3O75112 AC066615.1-201ENST00000640911 628 ntBASIC18.18■□□□□ 0.5
LDB3O75112 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB3O75112 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.18■□□□□ 0.5
LDB3O75112 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
LDB3O75112 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.18■□□□□ 0.5
LDB3O75112 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LDB3O75112 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LDB3O75112 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.17■□□□□ 0.5
LDB3O75112 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
LDB3O75112 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB3O75112 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.17■□□□□ 0.5
LDB3O75112 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LDB3O75112 FAM197Y1-201ENST00000421178 764 ntBASIC18.17■□□□□ 0.5
LDB3O75112 AC012618.2-201ENST00000428058 849 ntBASIC18.17■□□□□ 0.5
LDB3O75112 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.17■□□□□ 0.5
LDB3O75112 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 KSR1P1-201ENST00000446298 240 ntBASIC18.17■□□□□ 0.5
LDB3O75112 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.17■□□□□ 0.5
LDB3O75112 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LDB3O75112 AC233702.5-201ENST00000584107 538 ntBASIC18.17■□□□□ 0.5
LDB3O75112 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB3O75112 AC073195.1-201ENST00000607241 877 ntBASIC18.17■□□□□ 0.5
LDB3O75112 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LDB3O75112 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LDB3O75112 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LDB3O75112 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
LDB3O75112 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LDB3O75112 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
LDB3O75112 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LDB3O75112 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.16■□□□□ 0.5
LDB3O75112 AL160286.2-201ENST00000567150 934 ntBASIC18.16■□□□□ 0.5
LDB3O75112 AL445675.2-201ENST00000620291 557 ntBASIC18.16■□□□□ 0.5
LDB3O75112 AC113410.3-201ENST00000623366 203 ntBASIC18.16■□□□□ 0.5
LDB3O75112 AL049637.2-201ENST00000641778 930 ntBASIC18.16■□□□□ 0.5
LDB3O75112 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.16■□□□□ 0.5
LDB3O75112 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LDB3O75112 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LDB3O75112 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.15■□□□□ 0.5
LDB3O75112 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
LDB3O75112 KRT16P1-201ENST00000399124 1418 ntBASIC18.15■□□□□ 0.5
LDB3O75112 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.15■□□□□ 0.5
LDB3O75112 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LDB3O75112 MIR718-201ENST00000390190 70 ntBASIC18.15■□□□□ 0.5
LDB3O75112 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LDB3O75112 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms