Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.58■□□□□ 0.89
SOX1O00570 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.58■□□□□ 0.89
SOX1O00570 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.58■□□□□ 0.89
SOX1O00570 MIR662-201ENST00000384847 95 ntBASIC20.58■□□□□ 0.89
SOX1O00570 RPSAP43-201ENST00000402237 625 ntBASIC20.58■□□□□ 0.89
SOX1O00570 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SOX1O00570 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SOX1O00570 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.58■□□□□ 0.89
SOX1O00570 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.58■□□□□ 0.89
SOX1O00570 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX1O00570 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.58■□□□□ 0.88
SOX1O00570 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.57■□□□□ 0.88
SOX1O00570 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.57■□□□□ 0.88
SOX1O00570 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 SART3-203ENST00000546611 1184 ntBASIC20.57■□□□□ 0.88
SOX1O00570 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.57■□□□□ 0.88
SOX1O00570 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX1O00570 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX1O00570 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.56■□□□□ 0.88
SOX1O00570 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.56■□□□□ 0.88
SOX1O00570 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 AC239800.4-201ENST00000603712 296 ntBASIC20.56■□□□□ 0.88
SOX1O00570 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 AC233702.3-201ENST00000578656 1387 ntBASIC20.56■□□□□ 0.88
SOX1O00570 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.56■□□□□ 0.88
SOX1O00570 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX1O00570 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.56■□□□□ 0.88
SOX1O00570 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.55■□□□□ 0.88
SOX1O00570 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SOX1O00570 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.55■□□□□ 0.88
SOX1O00570 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 MIR7706-201ENST00000613747 67 ntBASIC20.55■□□□□ 0.88
SOX1O00570 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.55■□□□□ 0.88
SOX1O00570 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.55■□□□□ 0.88
SOX1O00570 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.55■□□□□ 0.88
SOX1O00570 TMEM179-206ENST00000616017 1645 ntBASIC20.55■□□□□ 0.88
SOX1O00570 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 ZNF259P1-201ENST00000407656 1365 ntBASIC20.55■□□□□ 0.88
SOX1O00570 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SOX1O00570 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX1O00570 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX1O00570 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX1O00570 GPX1P2-201ENST00000429271 606 ntBASIC20.54■□□□□ 0.88
SOX1O00570 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.54■□□□□ 0.88
SOX1O00570 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX1O00570 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX1O00570 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.54■□□□□ 0.88
SOX1O00570 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX1O00570 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms