Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PROS2P-201ENST00000474651 1951 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 Y_RNA.47-201ENST00000362697 108 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1287P-201ENST00000362914 107 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1243P-201ENST00000364028 107 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1060P-201ENST00000384664 107 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC083862.1-201ENST00000427378 1242 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 SNAP23P1-201ENST00000433229 246 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC105402.2-201ENST00000438503 358 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC073109.1-201ENST00000445066 978 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 U8.20-201ENST00000459445 131 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 CCDC34P1-201ENST00000507441 517 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RPS27AP18-201ENST00000515536 459 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RN7SKP35-201ENST00000517210 151 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RANP9-201ENST00000519957 271 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AP000676.2-201ENST00000529711 301 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 MTCO3P23-201ENST00000561363 289 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 RN7SL802P-201ENST00000577858 299 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 MIR4443-201ENST00000585052 53 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC010463.3-201ENST00000594077 500 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 MIR6864-201ENST00000617935 70 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AC069234.4-201ENST00000621276 412 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 AL450226.2-201ENST00000622913 439 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 ZNF807-201ENST00000328088 1707 ntBASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
LIMD1Q9UGP4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.84□□□□□ -1.32
LIMD1Q9UGP4 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.84□□□□□ -1.32
LIMD1Q9UGP4 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
LIMD1Q9UGP4 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC090337.1-201ENST00000579651 2074 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL122126.1-201ENST00000546905 1318 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 PANDAR-201ENST00000629595 1506 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RNU6-1115P-201ENST00000362490 106 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 SNORD115-7-201ENST00000365306 82 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 SNORD3H-201ENST00000384486 214 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL031985.1-201ENST00000392713 418 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 UBE2V1P2-201ENST00000397758 440 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL139805.1-201ENST00000407837 289 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RNU2-15P-201ENST00000410692 191 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 USP9YP16-201ENST00000430287 407 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL451139.1-201ENST00000434718 346 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC104058.1-201ENST00000448028 297 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 USP9YP23-201ENST00000455085 407 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RPL36AP13-201ENST00000457490 317 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 SNORD97-201ENST00000459187 142 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 MIR2053-201ENST00000459295 91 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RN7SL174P-201ENST00000475578 289 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RPL7P43-201ENST00000478876 753 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RPS10P20-201ENST00000494130 463 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL049779.2-201ENST00000553847 315 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 OR11H5P-201ENST00000554039 926 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL358913.1-201ENST00000554342 121 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 CYCSP38-201ENST00000559840 322 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC008555.7-201ENST00000605008 583 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL590099.1-201ENST00000615276 138 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 U1.41-201ENST00000617626 165 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 AL034408.1-201ENST00000637712 664 ntBASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.83□□□□□ -1.32
LIMD1Q9UGP4 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms