Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.4□□□□□ -1.54
NUP88Q99567 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.4□□□□□ -1.54
NUP88Q99567 RN7SKP31-201ENST00000516354 278 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC087373.1-201ENST00000524920 491 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 AL592221.1-201ENST00000605266 382 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC026634.1-201ENST00000634369 198 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 OR52H1-202ENST00000641796 1061 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NUP88Q99567 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
NUP88Q99567 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.4□□□□□ -1.55
NUP88Q99567 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.4□□□□□ -1.55
NUP88Q99567 ZNF542P-204ENST00000482727 1305 ntBASIC5.4□□□□□ -1.55
NUP88Q99567 AC108751.5-201ENST00000492880 1336 ntBASIC5.4□□□□□ -1.55
NUP88Q99567 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
NUP88Q99567 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
NUP88Q99567 AL136164.3-201ENST00000624429 3978 ntBASIC5.4□□□□□ -1.55
NUP88Q99567 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 PHKBP1-201ENST00000450951 1951 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC008549.2-201ENST00000333482 706 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 SNORA71.2-201ENST00000364941 134 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 RNU4-25P-201ENST00000410569 230 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AL365203.2-201ENST00000423444 196 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP88Q99567 IFNNP1-201ENST00000429219 553 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 RPS25P9-201ENST00000435591 252 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 CBX1P1-201ENST00000440184 427 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 KATNBL1P3-201ENST00000443475 909 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.39□□□□□ -1.55
NUP88Q99567 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 AC090142.1-201ENST00000465776 462 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 RPL21P126-201ENST00000470049 478 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC013828.1-201ENST00000481845 158 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 ACTG1P13-201ENST00000486987 1043 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 OR4G11P-201ENST00000492842 939 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 FTH1P24-201ENST00000503502 462 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP88Q99567 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC117522.2-201ENST00000510049 657 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC093281.2-201ENST00000510153 597 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 KRT19P6-201ENST00000510983 209 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 RNU6-1261P-201ENST00000517194 104 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP88Q99567 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC090888.1-201ENST00000561335 1141 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC074051.3-201ENST00000570238 358 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC011477.5-201ENST00000586571 259 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC103881.1-201ENST00000603476 538 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 DUXAP11-201ENST00000603858 526 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AL163642.2-201ENST00000604722 1019 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC121247.2-201ENST00000604776 136 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AL356218.2-201ENST00000605264 187 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 HSPE1P14-201ENST00000605812 302 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 AC097505.1-201ENST00000610199 565 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 AC139713.2-215ENST00000641428 5037 ntBASIC5.39□□□□□ -1.55
NUP88Q99567 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP88Q99567 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
NUP88Q99567 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP88Q99567 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 AC108467.2-201ENST00000617640 1597 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 AP000580.1-201ENST00000404439 358 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 U3.35-201ENST00000408405 208 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 RPL21P108-201ENST00000413857 481 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AL022400.1-201ENST00000423946 935 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP88Q99567 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP88Q99567 GSTA7P-201ENST00000438425 448 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AC004938.1-201ENST00000438468 308 ntBASIC5.38□□□□□ -1.55
NUP88Q99567 AC241584.1-201ENST00000438469 1241 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms