Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC113430.1-201ENST00000506872 718 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC135001.1-201ENST00000544546 283 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC073657.2-201ENST00000605661 303 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 HSPA8P19-201ENST00000505359 1517 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC073522.1-201ENST00000483312 377 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC018442.3-201ENST00000523025 183 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 AC124312.4-201ENST00000605533 310 ntBASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC88AQ3V6T2 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 MIR449A-201ENST00000362113 91 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 RNU6-7-201ENST00000364784 107 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 RNU6-8-201ENST00000365467 107 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 RN7SKP111-201ENST00000410349 271 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 EEF1A1P41-201ENST00000414667 207 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AL158071.1-201ENST00000430315 461 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC091544.1-201ENST00000484702 348 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 NARSP2-201ENST00000518524 679 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC005476.1-201ENST00000554427 397 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC006946.3-201ENST00000609791 756 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC009464.1-201ENST00000615731 469 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AL732372.2-225ENST00000642124 456 ntBASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88AQ3V6T2 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 ANP32BP2-201ENST00000454525 545 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 HMGB3P13-201ENST00000511263 607 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC010486.1-201ENST00000511793 424 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC005798.1-201ENST00000513715 387 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC092111.2-201ENST00000611627 1414 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 SRP72P2-201ENST00000344851 1979 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC008885.1-201ENST00000514930 301 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC004024.1-201ENST00000549244 247 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AL121603.1-201ENST00000553815 142 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC104984.5-201ENST00000586878 94 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 AC018692.3-201ENST00000623929 123 ntBASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC88AQ3V6T2 HSPA8P17-201ENST00000427029 1382 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 RNU4-44P-201ENST00000363050 141 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 RN7SL863P-201ENST00000462370 296 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 HIGD1AP1-201ENST00000550979 275 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 KC877982.1-201ENST00000602313 470 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 MIR7851-201ENST00000610611 160 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms