Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP41Q3LFD5 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AL352979.3-201ENST00000553515 247 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC074050.1-201ENST00000563247 211 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AL160290.3-201ENST00000604869 165 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 Z98200.1-201ENST00000607298 470 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC087683.2-201ENST00000611384 326 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC131238.1-201ENST00000617135 328 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 LINC00901.1-201ENST00000617252 152 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AL445363.3-201ENST00000623080 671 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 AC109454.4-201ENST00000623411 649 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP41Q3LFD5 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP41Q3LFD5 SCN1A-220ENST00000641603 12506 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 AL451142.2-201ENST00000429076 2090 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 DDX18P3-201ENST00000404856 2007 ntBASIC4.58□□□□□ -1.68
USP41Q3LFD5 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
USP41Q3LFD5 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC139713.2-215ENST00000641428 5037 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL353743.4-201ENST00000422653 1547 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 MTND4P10-201ENST00000446199 1363 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 MIR448-201ENST00000362131 111 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 RNA5SP52-201ENST00000362448 134 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 RN7SKP280-201ENST00000364196 304 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 OR1L1-202ENST00000373686 1083 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL512430.2-201ENST00000406786 339 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 RN7SKP33-201ENST00000410942 340 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC108032.1-201ENST00000416706 207 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 ELOCP13-201ENST00000443934 329 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 SNORD11.1-201ENST00000459482 85 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 PRDX3P4-201ENST00000470828 747 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 RPS3AP6-201ENST00000484430 795 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC023632.1-201ENST00000518463 375 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 EEF1A1P37-201ENST00000522748 715 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC105233.3-201ENST00000531125 744 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL442163.2-201ENST00000553912 710 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL392112.1-201ENST00000605115 829 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 MIR6867-201ENST00000610636 67 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 AL121895.2-201ENST00000619558 447 ntBASIC4.57□□□□□ -1.68
USP41Q3LFD5 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP41Q3LFD5 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.57□□□□□ -1.68
USP41Q3LFD5 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP41Q3LFD5 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 MIR372-201ENST00000362225 67 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 MIR134-201ENST00000385258 73 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 AL009174.1-201ENST00000426577 416 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AL117339.2-201ENST00000430475 180 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 EEF1A1P39-201ENST00000440791 250 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AL589880.1-201ENST00000448271 287 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC112492.1-201ENST00000449607 712 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 EIF4A1P11-201ENST00000451239 222 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 RPL7P22-201ENST00000466005 733 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC025445.1-201ENST00000502728 300 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 Y_RNA.717-201ENST00000517106 92 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC026407.1-201ENST00000518369 204 ntBASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
USP41Q3LFD5 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms