Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 PHKBP1-201ENST00000450951 1951 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.15□□□□□ -1.91
CHD3Q12873 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.15□□□□□ -1.91
CHD3Q12873 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 SNORD3H-201ENST00000384486 214 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CHD3Q12873 SEC63P1-201ENST00000425785 1258 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 AC005300.1-201ENST00000428401 373 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.15□□□□□ -1.91
CHD3Q12873 SNORA71B-202ENST00000439232 272 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 Z75741.1-201ENST00000446793 314 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 RPS3AP14-201ENST00000483907 780 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.15□□□□□ -1.91
CHD3Q12873 SETP14-201ENST00000497538 873 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 AC097462.2-201ENST00000504623 481 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.15□□□□□ -1.91
CHD3Q12873 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.15□□□□□ -1.91
CHD3Q12873 HIGD1AP18-201ENST00000520730 278 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 AC115621.1-201ENST00000604653 858 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 AC119674.1-207ENST00000641355 633 ntBASIC3.15□□□□□ -1.91
CHD3Q12873 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CHD3Q12873 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CHD3Q12873 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHD3Q12873 CR381670.1-201ENST00000624291 1693 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.14□□□□□ -1.91
CHD3Q12873 SNORD9-201ENST00000362566 104 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.14□□□□□ -1.91
CHD3Q12873 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.14□□□□□ -1.91
CHD3Q12873 MIR4513-201ENST00000581077 86 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 BMS1P7-201ENST00000602440 1052 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHD3Q12873 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHD3Q12873 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CHD3Q12873 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CHD3Q12873 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CHD3Q12873 NCAPGP1-201ENST00000505112 1814 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHD3Q12873 OR4K6P-201ENST00000416478 897 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AC074367.1-201ENST00000438685 1125 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 HMGB3P8-201ENST00000449709 577 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 RPL23AP62-201ENST00000463396 453 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 SEPT7P6-201ENST00000469999 1143 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.14□□□□□ -1.91
CHD3Q12873 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CHD3Q12873 SNORA70.18-201ENST00000516696 98 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.14□□□□□ -1.91
CHD3Q12873 AC007458.1-201ENST00000542812 373 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 MIR3922-201ENST00000585192 84 ntBASIC3.14□□□□□ -1.91
CHD3Q12873 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.14□□□□□ -1.91
CHD3Q12873 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.14□□□□□ -1.91
CHD3Q12873 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 RLIMP2-201ENST00000427891 1563 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.13□□□□□ -1.91
CHD3Q12873 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.13□□□□□ -1.91
CHD3Q12873 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC004944.1-201ENST00000517807 3059 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC007685.1-201ENST00000329806 452 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 RNA5SP42-201ENST00000364278 115 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 MIR1289-1-201ENST00000408836 144 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 AL035423.1-201ENST00000420331 213 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AL512649.1-201ENST00000428997 581 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 AL353597.2-202ENST00000434901 373 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC243772.1-201ENST00000451620 410 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 MTCO3P16-201ENST00000454456 754 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 ANP32BP2-201ENST00000454525 545 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC069306.1-201ENST00000507006 843 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.13□□□□□ -1.91
CHD3Q12873 AC009452.1-201ENST00000640823 606 ntBASIC3.13□□□□□ -1.91
CHD3Q12873 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CHD3Q12873 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CHD3Q12873 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms