Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.6□□□□□ -1.67
PTPN9P43378 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.6□□□□□ -1.67
PTPN9P43378 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.6□□□□□ -1.67
PTPN9P43378 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.6□□□□□ -1.67
PTPN9P43378 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.6□□□□□ -1.67
PTPN9P43378 AP003392.5-201ENST00000607857 415 ntBASIC4.6□□□□□ -1.67
PTPN9P43378 AC048344.4-201ENST00000619744 527 ntBASIC4.6□□□□□ -1.67
PTPN9P43378 AC091304.6-201ENST00000619761 202 ntBASIC4.6□□□□□ -1.67
PTPN9P43378 AC067931.1-201ENST00000624190 671 ntBASIC4.6□□□□□ -1.67
PTPN9P43378 MTND4P26-201ENST00000415971 1359 ntBASIC4.6□□□□□ -1.67
PTPN9P43378 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTPN9P43378 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
PTPN9P43378 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTPN9P43378 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
PTPN9P43378 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTPN9P43378 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
PTPN9P43378 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.6□□□□□ -1.67
PTPN9P43378 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
PTPN9P43378 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.6□□□□□ -1.67
PTPN9P43378 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.6□□□□□ -1.67
PTPN9P43378 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.6□□□□□ -1.67
PTPN9P43378 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.59□□□□□ -1.67
PTPN9P43378 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTPN9P43378 AC008033.1-201ENST00000216407 1162 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 OR5P1P-201ENST00000299512 925 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 Y_RNA.192-201ENST00000363977 102 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
PTPN9P43378 RPS20P14-201ENST00000412545 360 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AL450992.3-201ENST00000413192 568 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 SNRPFP1-201ENST00000414761 252 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 MRPS36P1-201ENST00000421291 307 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 GTF2IP23-201ENST00000423746 351 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 MTND5P25-201ENST00000430499 799 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC092393.1-201ENST00000439625 742 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 Z83846.1-201ENST00000446798 265 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC104306.1-201ENST00000449702 371 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.59□□□□□ -1.67
PTPN9P43378 RPS29P33-201ENST00000456717 146 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.59□□□□□ -1.67
PTPN9P43378 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
PTPN9P43378 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC108734.3-201ENST00000481241 1165 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC015795.1-201ENST00000513669 327 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AF279873.1-201ENST00000523393 313 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC100770.1-201ENST00000532310 322 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 PDCL2P2-201ENST00000533651 189 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AP000619.3-201ENST00000535634 1127 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC002400.1-201ENST00000569310 726 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC087190.4-201ENST00000574616 8334 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC005412.1-201ENST00000580812 1049 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AL450489.1-201ENST00000612071 468 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
PTPN9P43378 AP000346.3-201ENST00000622821 210 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.59□□□□□ -1.67
PTPN9P43378 AC017037.3-201ENST00000625016 472 ntBASIC4.59□□□□□ -1.67
PTPN9P43378 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
PTPN9P43378 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.59□□□□□ -1.68
PTPN9P43378 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.58□□□□□ -1.68
PTPN9P43378 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.58□□□□□ -1.68
PTPN9P43378 Z99496.1-201ENST00000469424 1477 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PTPN9P43378 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 MIR708-201ENST00000390708 88 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 HDGFP1-201ENST00000405943 252 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AL139098.1-201ENST00000407291 389 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PTPN9P43378 RPS27AP7-201ENST00000422792 455 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 PDSS1P1-201ENST00000422953 1114 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.58□□□□□ -1.68
PTPN9P43378 SKP1P3-201ENST00000429280 487 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 MTND1P32-201ENST00000433043 938 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.58□□□□□ -1.68
PTPN9P43378 AC073143.1-201ENST00000436316 395 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms