Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 ASNSP1-204ENST00000641977 1664 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AL512646.1-201ENST00000269395 1077 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 RNA5SP391-201ENST00000363456 119 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 SNORD74.4-201ENST00000364129 80 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 U1.1-201ENST00000384101 164 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 SNORA51.12-201ENST00000384448 134 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 MIR199A2-201ENST00000385289 110 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 SNORA11C-201ENST00000408532 129 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC114814.2-201ENST00000419195 485 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 YWHAEP5-201ENST00000431545 765 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 RPL37P1-201ENST00000432310 284 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 KCTD9P3-201ENST00000434597 1169 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 FABP5P3-201ENST00000437960 408 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC006994.1-201ENST00000438212 839 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AP000949.1-201ENST00000438328 629 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AL158053.1-201ENST00000441503 453 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AL096803.2-201ENST00000450032 677 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 HMGB1P21-201ENST00000502313 581 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 OR5H4P-201ENST00000510851 923 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC011611.5-201ENST00000552477 578 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 MIR4458-201ENST00000578872 75 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AP005229.2-201ENST00000609980 697 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC018926.3-201ENST00000618841 406 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AF001550.2-201ENST00000636643 217 ntBASIC3.94□□□□□ -1.78
LHX3Q9UBR4 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
LHX3Q9UBR4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 OR52B1P-201ENST00000316506 909 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RNA5SP97-201ENST00000365006 84 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 MIR525-201ENST00000384978 85 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 OR2X1P-201ENST00000421144 687 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 IPMKP1-201ENST00000425988 855 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RPL7P2-201ENST00000427639 268 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RPL21P11-201ENST00000461458 483 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RN7SL323P-201ENST00000494712 295 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RPL7L1P13-201ENST00000511702 739 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 NPM1P41-201ENST00000512920 831 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RN7SKP82-201ENST00000516786 223 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 SCARNA14-201ENST00000516903 136 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 OR4A12P-201ENST00000530847 918 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 HSPE1P5-201ENST00000561489 272 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC067852.4-201ENST00000590314 478 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 BNIP3P19-201ENST00000605397 577 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC092608.3-201ENST00000625017 386 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 AL139811.1-201ENST00000424779 2299 ntBASIC3.93□□□□□ -1.78
LHX3Q9UBR4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.93□□□□□ -1.78
LHX3Q9UBR4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms