Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AL357552.1-201ENST00000445254 415 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 SETP14-201ENST00000497538 873 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 PCBP2P3-201ENST00000509726 843 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 NDUFB4P9-201ENST00000511646 388 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC022884.3-201ENST00000579571 248 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 MIR4425-201ENST00000580572 84 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AL034351.1-201ENST00000605288 668 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC103710.3-201ENST00000608157 948 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC024941.1-201ENST00000612250 334 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC139769.3-201ENST00000618383 175 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC119674.1-207ENST00000641355 633 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 NMD3P1-201ENST00000439704 1488 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 DCAF13P3-201ENST00000561147 1334 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 AC090337.1-201ENST00000579651 2074 ntBASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS29Q9UBQ0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 SNORD9-201ENST00000362566 104 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 SNORD3H-201ENST00000384486 214 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 PTP4A1P5-201ENST00000420305 455 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AL035423.1-201ENST00000420331 213 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 CCRL1P1-201ENST00000449542 1053 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 SNORD105B-201ENST00000458770 79 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 SNORD108-201ENST00000459332 71 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 RPL9P32-201ENST00000464118 620 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 RPL7L1P8-201ENST00000469911 741 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC007537.2-201ENST00000472093 511 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AL139174.1-201ENST00000531489 886 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC068831.8-201ENST00000620171 435 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 AC007823.1-201ENST00000569932 1566 ntBASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS29Q9UBQ0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC025125.1-201ENST00000624743 1922 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 SNORD6-201ENST00000365444 73 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 HMGB3P18-201ENST00000406327 590 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 Z98941.1-201ENST00000407764 100 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 NOTCH2P1-201ENST00000443481 624 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AL136097.1-201ENST00000456945 913 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC091959.2-201ENST00000477363 321 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AP000563.1-201ENST00000490865 758 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC020893.1-201ENST00000502452 580 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 PRELID3BP5-201ENST00000508612 460 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 ARL2BPP6-201ENST00000512757 439 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 SNORA70.19-201ENST00000516717 90 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC020914.6-201ENST00000594327 272 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AC010591.1-201ENST00000603941 649 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 Z82195.1-201ENST00000604558 398 ntBASIC3.37□□□□□ -1.87
VPS29Q9UBQ0 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms