Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL159987.1-201ENST00000347911 293 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RNA5SP435-201ENST00000364044 108 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RNU6-878P-201ENST00000384578 110 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.529-201ENST00000384586 119 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RPL7P25-201ENST00000404151 721 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RNU6-908P-201ENST00000410160 94 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RNU2-8P-201ENST00000410727 190 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL353193.1-201ENST00000421444 268 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MEMO1P4-201ENST00000453590 386 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 YWHAEP1-201ENST00000453697 763 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 MTCO3P2-201ENST00000457365 171 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RPS23P2-201ENST00000463671 415 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RPL7P22-201ENST00000466005 733 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RPS23P6-201ENST00000466136 431 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RNU6-1153P-201ENST00000516760 105 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 RN7SKP96-201ENST00000516948 297 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 SNORA43.3-201ENST00000517240 103 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC008127.2-201ENST00000549925 1075 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 HIF1AP1-201ENST00000553642 175 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 IGBP1P1-201ENST00000554337 1009 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AL513327.3-201ENST00000602618 469 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 Z95327.3-201ENST00000610385 572 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC090607.5-201ENST00000615692 224 ntBASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.39□□□□□ -1.55
PTCHD1Q96NR3 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 SNORA64.1-201ENST00000362600 132 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.46-201ENST00000362695 102 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.86-201ENST00000363020 111 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.142-201ENST00000363491 102 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RNU1-85P-201ENST00000364127 164 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RNU6-921P-201ENST00000384361 107 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 SNORA17A-201ENST00000391185 133 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC087752.1-201ENST00000391360 558 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RNA5SP178-201ENST00000410380 128 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC127391.1-201ENST00000411737 98 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 SDHDP6-201ENST00000414693 480 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC093155.2-201ENST00000420734 937 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AL662874.1-201ENST00000426065 230 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RPL7P54-201ENST00000438336 674 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RNU6-420P-201ENST00000458780 107 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 RNU6-615P-201ENST00000516065 106 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.675-201ENST00000516389 149 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 OR5M2P-201ENST00000529003 936 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 ARL2BPP2-201ENST00000550907 489 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LARP7P2-201ENST00000575306 125 ntBASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD1Q96NR3 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms