Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 IFNA20P-201ENST00000436840 528 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RPL12P49-201ENST00000441100 121 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 VPS25P1-201ENST00000455691 508 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MRPS17P3-201ENST00000465453 385 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC005165.2-201ENST00000466070 380 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 HMGB1P25-201ENST00000468402 607 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RPL7P19-201ENST00000469948 618 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RPL21P99-201ENST00000480369 423 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 HMGN1P13-201ENST00000505795 138 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC092436.1-201ENST00000506450 503 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RNA5SP116-201ENST00000516132 98 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RN7SKP116-201ENST00000516902 319 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ODF1-202ENST00000518835 368 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 HMGN1P28-201ENST00000521340 364 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 CYCSP25-201ENST00000525280 316 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 DEFB108D-201ENST00000527787 222 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 BNIP3P6-201ENST00000549284 499 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC087477.6-201ENST00000559595 843 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MIR3189-201ENST00000578735 73 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC063977.7-201ENST00000594454 337 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC012368.3-201ENST00000604190 219 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL008729.2-201ENST00000606393 473 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MIR6823-201ENST00000622118 61 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 U6.114-201ENST00000636407 96 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 TPTEP1-208ENST00000636884 213 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC007603.3-201ENST00000636915 979 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AP005435.3-201ENST00000531260 3198 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ST7-203ENST00000393443 2360 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC027287.1-201ENST00000553115 1453 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 DMD-222ENST00000474231 5209 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.67-201ENST00000362870 100 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 RNU6-188P-201ENST00000364207 107 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 MIR191-201ENST00000384873 92 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL606923.1-201ENST00000406616 190 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC114491.1-201ENST00000416095 246 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CHEK2P3-201ENST00000416118 248 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 UBE2FP1-201ENST00000416536 447 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 MTCO3P46-201ENST00000425787 232 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 RPL35AP22-201ENST00000436855 335 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 OR3D1P-201ENST00000438288 955 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL022237.1-201ENST00000446663 358 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 PTMAP3-201ENST00000447474 330 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC010655.1-201ENST00000449336 292 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL121877.1-201ENST00000453704 622 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC007967.1-201ENST00000455422 1159 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 snoU109.4-201ENST00000458953 143 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 RPS7P10-201ENST00000464254 603 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 RN7SL221P-201ENST00000466190 281 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC007537.2-201ENST00000472093 511 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC044810.1-201ENST00000480271 711 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC010343.2-201ENST00000510162 224 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 TTC39CP1-201ENST00000512513 755 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 RNA5SP206-201ENST00000516703 121 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms