Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SNORD108-201ENST00000459332 71 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 TMED11P-201ENST00000479478 690 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 GAPDHP36-201ENST00000480688 918 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 HMGB3P14-201ENST00000494195 599 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 RN7SKP141-201ENST00000516167 338 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 RNU6-1308P-201ENST00000516817 103 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 HIGD1AP18-201ENST00000520730 278 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AC087499.8-201ENST00000578406 226 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 MIR5047-201ENST00000579212 100 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 Z82195.1-201ENST00000604558 398 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 U7.8-201ENST00000619968 63 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 CDRT1-208ENST00000630868 794 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 AC119674.1-212ENST00000641155 993 ntBASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC65Q8IXS2 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RNU6-244P-201ENST00000391028 104 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RPS20P25-201ENST00000412447 352 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 TCEA1P4-201ENST00000415066 844 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 TCEA1P2-201ENST00000420496 906 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RPL7P2-201ENST00000427639 268 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RPS29P7-201ENST00000439662 171 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RPS20P21-201ENST00000466859 343 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC068587.1-201ENST00000483613 781 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 RN7SKP83-201ENST00000516512 178 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 MIR5685-201ENST00000579080 79 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC068831.8-201ENST00000620171 435 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC104820.1-201ENST00000624183 307 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 U6.98-201ENST00000637157 84 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 AC006504.1-201ENST00000562493 3666 ntBASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC65Q8IXS2 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 OR4A15-201ENST00000314706 1035 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 RPL32P23-201ENST00000397237 405 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 MTND2P15-201ENST00000418575 892 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 RPL30P3-201ENST00000424262 333 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 MTCO1P52-201ENST00000433928 531 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC005229.2-201ENST00000456995 399 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 UBDP1-202ENST00000457888 382 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 SNRPGP3-201ENST00000469405 227 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 RN7SL330P-201ENST00000469709 307 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC012414.2-201ENST00000559474 187 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 HSPE1P5-201ENST00000561489 272 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC023158.1-201ENST00000561632 1025 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AP001180.3-201ENST00000582221 145 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 VN1R85P-201ENST00000601587 426 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC099676.1-201ENST00000608886 657 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AC016957.2-201ENST00000616998 848 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 AL118496.1-201ENST00000440201 1812 ntBASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 SEPT7P7-201ENST00000420492 1301 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms