Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 ACTR3P2-201ENST00000439585 1257 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 MTND2P20-201ENST00000440805 661 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 TRGVB-201ENST00000453257 471 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 DNAJC19P1-201ENST00000455312 319 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 RNA5SP269-201ENST00000459032 137 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 PPIAP21-201ENST00000464473 501 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 RPL21P71-201ENST00000465598 459 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 RN7SL189P-201ENST00000468631 289 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 AC239860.2-201ENST00000525886 270 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AP003392.2-201ENST00000527269 208 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 CYCSP2-201ENST00000558168 301 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 EIF5A2P1-201ENST00000564027 460 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 PCMTD1P2-201ENST00000565017 355 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC018552.3-201ENST00000567416 561 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 EIF1P4-201ENST00000572664 335 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 SNORD39.3-201ENST00000584451 71 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 AL162431.4-201ENST00000604674 411 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC005084.1-201ENST00000605160 304 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 HSPE1P14-201ENST00000605812 302 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 AC068137.3-201ENST00000639191 341 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC073869.6-201ENST00000640656 341 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 MAPK10-328ENST00000641553 4009 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC004817.4-201ENST00000602396 3625 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 PCAT14-202ENST00000627127 3935 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AL031985.3-201ENST00000565390 2449 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC134882.1-201ENST00000603738 1676 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC022031.1-201ENST00000585985 2593 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HOXD3P31249 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 U3.3-201ENST00000362986 216 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 RNA5SP223-201ENST00000365174 120 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 RNU6-348P-201ENST00000384386 107 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 MIR589-201ENST00000385238 99 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXD3P31249 CYB5AP4-201ENST00000396692 399 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 SNRPEP2-201ENST00000397592 279 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 PRRC2CP1-201ENST00000404428 159 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 EIF4A1P3-201ENST00000411521 244 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXD3P31249 RAD23BP2-201ENST00000416003 1207 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AL807761.1-201ENST00000417622 171 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AL953862.1-201ENST00000423016 168 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC073335.1-201ENST00000427776 363 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 RPL7AP49-201ENST00000429522 581 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 C8orf59P1-201ENST00000429930 303 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AL591438.1-201ENST00000433508 581 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC092641.1-201ENST00000440229 772 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXD3P31249 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXD3P31249 AC092647.2-201ENST00000452998 253 ntBASIC4.01□□□□□ -1.77
HOXD3P31249 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXD3P31249 OR9M1P-201ENST00000459641 921 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms