Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NBR2-204ENST00000587322 63 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AL163642.2-201ENST00000604722 1019 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC012557.2-201ENST00000605919 418 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 AC011939.3-201ENST00000613686 466 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 AL592148.3-201ENST00000608771 2646 ntBASIC5.33□□□□□ -1.56
SMARCA1P28370 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.33□□□□□ -1.56
SMARCA1P28370 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SMARCA1P28370 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SMARCA1P28370 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SMARCA1P28370 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SMARCA1P28370 Z99496.1-201ENST00000469424 1477 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AL391994.1-201ENST00000254724 282 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 UBBP2-201ENST00000376781 231 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 RNU6-1200P-201ENST00000384162 107 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 SNORA51.12-201ENST00000384448 134 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 RNU6-146P-201ENST00000384602 108 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AL359643.1-201ENST00000404109 423 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AL021407.1-201ENST00000404531 386 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 RPL36AP10-201ENST00000421785 322 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 RPL12P34-201ENST00000424532 479 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.32□□□□□ -1.56
SMARCA1P28370 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 RPL12P46-201ENST00000436610 195 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 H2AFZP6-201ENST00000444403 394 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 SYPL1P1-201ENST00000473622 768 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 OR2A20P-203ENST00000498397 1268 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC109445.1-201ENST00000512356 383 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 RN7SKP31-201ENST00000516354 278 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 HMGB1P19-201ENST00000517578 577 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 OR5AN2P-201ENST00000534535 896 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 PDCD5P1-201ENST00000543528 309 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 NDUFAF4P1-201ENST00000559425 519 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC5.32□□□□□ -1.56
SMARCA1P28370 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC5.32□□□□□ -1.56
SMARCA1P28370 ISCA1P3-201ENST00000577104 373 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AP005119.2-201ENST00000579735 1105 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AC209154.1-201ENST00000582156 337 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 HMGB2P1-201ENST00000591146 634 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC006539.2-201ENST00000601729 572 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.32□□□□□ -1.56
SMARCA1P28370 AC103881.1-201ENST00000603476 538 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AL390816.3-201ENST00000604527 1066 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 IMMP1LP1-201ENST00000605170 488 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 COX6CP4-201ENST00000605798 228 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AC092140.2-201ENST00000618027 521 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AC073348.1-201ENST00000623002 331 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 AC091965.5-201ENST00000624785 342 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SMARCA1P28370 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 ASNSP1-201ENST00000518311 1939 ntBASIC5.32□□□□□ -1.56
SMARCA1P28370 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SMARCA1P28370 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMARCA1P28370 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 AC108467.2-201ENST00000617640 1597 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 SMG1P4-204ENST00000523028 4131 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMARCA1P28370 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
SMARCA1P28370 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RNA5SP505-201ENST00000364748 108 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 MIR129-1-201ENST00000384972 72 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AL358176.3-201ENST00000420757 454 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RPS27AP7-201ENST00000422792 455 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC012519.1-201ENST00000424588 610 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AL158073.1-201ENST00000426848 1104 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 RPL23AP1-201ENST00000428990 471 ntBASIC5.31□□□□□ -1.56
SMARCA1P28370 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.31□□□□□ -1.56
SMARCA1P28370 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms