Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
COL6A1P12109 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 RNU6-543P-201ENST00000362576 108 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 Y_RNA.311-201ENST00000365068 96 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 U3.22-201ENST00000391120 215 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC073136.2-201ENST00000417282 849 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 MTCO2P19-201ENST00000427513 598 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 RPS27AP6-201ENST00000427962 448 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A1P12109 VN1R34P-201ENST00000447387 883 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC093392.2-201ENST00000450682 337 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 RFC5P1-201ENST00000454419 874 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 RPL31P58-201ENST00000469001 379 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 OR52A4P-201ENST00000472867 958 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 GAPDHP39-201ENST00000481866 979 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 PRDX4P1-201ENST00000507189 574 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC093824.1-201ENST00000508796 343 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 RNU6-528P-201ENST00000516926 100 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 SERPINE4P-201ENST00000554978 281 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC092325.1-201ENST00000566449 554 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 MIR4277-201ENST00000578298 84 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC010857.1-201ENST00000606398 594 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AP002360.3-201ENST00000607673 710 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC093388.1-201ENST00000609166 430 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC005618.4-201ENST00000625053 554 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC000095.2-202ENST00000637415 154 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
COL6A1P12109 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A1P12109 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
COL6A1P12109 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A1P12109 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 RN7SKP153-201ENST00000365026 316 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A1P12109 OR6C69P-201ENST00000394268 893 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A1P12109 MIR548F1-201ENST00000408667 84 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.65□□□□□ -1.5
COL6A1P12109 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 RPL23AP39-201ENST00000415533 405 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 NDUFB4P8-201ENST00000435351 367 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 TMX2P1-201ENST00000436507 708 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AL121601.2-201ENST00000438019 707 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 HMGB3P9-201ENST00000441799 583 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 GEMIN8P3-201ENST00000445417 720 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AL592447.1-201ENST00000447592 540 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 FGF7P6-202ENST00000451282 293 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A1P12109 IFNWP4-201ENST00000453148 294 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A1P12109 DNAJC19P1-201ENST00000455312 319 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 FCF1P3-201ENST00000496394 590 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A1P12109 AC087808.1-201ENST00000520501 361 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.65□□□□□ -1.5
COL6A1P12109 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.65□□□□□ -1.5
COL6A1P12109 EEF1B2P4-201ENST00000551398 348 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.65□□□□□ -1.5
COL6A1P12109 ZNF519P2-201ENST00000557032 169 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 NIFKP8-201ENST00000560500 874 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 MIR3160-1-201ENST00000577972 85 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 BNIP3P4-201ENST00000604946 565 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AL353621.2-201ENST00000605340 133 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 AC022140.2-201ENST00000623500 188 ntBASIC5.65□□□□□ -1.5
COL6A1P12109 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COL6A1P12109 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A1P12109 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms