Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DUXAP6-201ENST00000553858 601 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AP000919.1-202ENST00000581139 1264 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.69□□□□□ -1.98
FOXA3P55318 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC2.69□□□□□ -1.98
FOXA3P55318 AC009948.4-201ENST00000604692 675 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC011816.2-201ENST00000607089 556 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC018754.1-201ENST00000607486 925 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AL121890.3-201ENST00000618494 516 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
FOXA3P55318 AF001550.2-201ENST00000636643 217 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 AC005261.4-201ENST00000600047 1385 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 AC096656.1-201ENST00000623826 1364 ntBASIC2.69□□□□□ -1.98
FOXA3P55318 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.69□□□□□ -1.98
FOXA3P55318 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.69□□□□□ -1.98
FOXA3P55318 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
FOXA3P55318 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA3P55318 TTN-204ENST00000360870 18218 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA3P55318 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
FOXA3P55318 AL079305.1-201ENST00000623159 3008 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 RNU4-39P-201ENST00000362455 127 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 RNA5-8SP7-201ENST00000363443 155 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 RNA5SP130-201ENST00000364431 114 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA3P55318 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
FOXA3P55318 RNU6-398P-201ENST00000384143 109 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 SNORA48.8-201ENST00000391324 134 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 AL139128.1-201ENST00000413921 941 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC017079.2-201ENST00000416102 485 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 FTH1P1-201ENST00000437933 532 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 SETD6P1-201ENST00000444575 317 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA3P55318 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 AC092754.2-201ENST00000463506 460 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 UQCRHP4-201ENST00000471686 272 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC105137.1-201ENST00000484355 562 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 SETP14-201ENST00000497538 873 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 PDLIM1P4-201ENST00000504327 1006 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC111000.5-201ENST00000506559 1178 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA3P55318 SNORA70.19-201ENST00000516717 90 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 RPL12P22-201ENST00000519073 490 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC104027.1-201ENST00000521887 300 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC023161.2-201ENST00000551218 780 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.68□□□□□ -1.98
FOXA3P55318 NF1P5-201ENST00000588287 448 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 IPO5P1-202ENST00000600039 287 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC234771.5-201ENST00000600161 514 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC084373.1-201ENST00000603311 235 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 AC090425.2-201ENST00000608818 501 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 AC139769.3-201ENST00000618383 175 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AL357559.1-201ENST00000622228 274 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 AC006065.5-201ENST00000623427 349 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 LGI1-209ENST00000627699 664 ntTSL 3 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC073476.4-201ENST00000628409 72 ntBASIC2.68□□□□□ -1.98
FOXA3P55318 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
FOXA3P55318 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.68□□□□□ -1.98
FOXA3P55318 AC007496.3-201ENST00000624987 3443 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA3P55318 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA3P55318 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA3P55318 U3.11-201ENST00000364476 212 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AL583834.1-201ENST00000406943 343 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.67□□□□□ -1.98
FOXA3P55318 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA3P55318 MTND4P22-201ENST00000413116 1169 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 XKRYP4-201ENST00000414395 483 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 HMGB3P23-201ENST00000414981 585 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA3P55318 MTCYBP7-201ENST00000419540 1134 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA3P55318 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC2.67□□□□□ -1.98
FOXA3P55318 AL772161.1-201ENST00000439130 476 ntBASIC2.67□□□□□ -1.98
FOXA3P55318 MTCYBP21-201ENST00000443300 1113 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms