Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL669831.4-202ENST00000590817 238 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AP003973.1-201ENST00000604639 691 ntBASIC4.77□□□□□ -1.65
BDNFP23560 COX6CP4-201ENST00000605798 228 ntBASIC4.77□□□□□ -1.65
BDNFP23560 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 AL354976.1-201ENST00000613843 387 ntBASIC4.77□□□□□ -1.65
BDNFP23560 MIR8069-1-201ENST00000616627 86 ntBASIC4.77□□□□□ -1.65
BDNFP23560 MIR8069-2-201ENST00000621412 86 ntBASIC4.77□□□□□ -1.65
BDNFP23560 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.77□□□□□ -1.65
BDNFP23560 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 CPHL1P-201ENST00000461341 3407 ntBASIC4.77□□□□□ -1.65
BDNFP23560 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
BDNFP23560 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
BDNFP23560 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
BDNFP23560 AC097504.1-201ENST00000515103 2415 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC066616.2-201ENST00000559334 1481 ntBASIC4.76□□□□□ -1.65
BDNFP23560 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 FAM3C2-201ENST00000312214 681 ntBASIC4.76□□□□□ -1.65
BDNFP23560 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 SNORA62-201ENST00000365493 153 ntBASIC4.76□□□□□ -1.65
BDNFP23560 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 AL138880.1-201ENST00000405824 642 ntBASIC4.76□□□□□ -1.65
BDNFP23560 RNA5SP56-201ENST00000410277 118 ntBASIC4.76□□□□□ -1.65
BDNFP23560 SNRPFP1-201ENST00000414761 252 ntBASIC4.76□□□□□ -1.65
BDNFP23560 COX6CP17-201ENST00000421389 185 ntBASIC4.76□□□□□ -1.65
BDNFP23560 RAD23BP1-201ENST00000421404 1227 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AL513174.1-201ENST00000423182 629 ntBASIC4.76□□□□□ -1.65
BDNFP23560 HSFY1P1-201ENST00000423928 1178 ntBASIC4.76□□□□□ -1.65
BDNFP23560 MRPL50P1-201ENST00000431951 384 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.76□□□□□ -1.65
BDNFP23560 AL356276.2-201ENST00000435919 558 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC241584.1-201ENST00000438469 1241 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.76□□□□□ -1.65
BDNFP23560 AC011276.1-201ENST00000469688 323 ntBASIC4.76□□□□□ -1.65
BDNFP23560 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.76□□□□□ -1.65
BDNFP23560 BOLA3P3-201ENST00000505182 232 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.76□□□□□ -1.65
BDNFP23560 IGKV2D-36-201ENST00000518643 226 ntBASIC4.76□□□□□ -1.65
BDNFP23560 PTK2-220ENST00000520151 573 ntTSL 4 BASIC4.76□□□□□ -1.65
BDNFP23560 AC104417.1-201ENST00000523974 751 ntBASIC4.76□□□□□ -1.65
BDNFP23560 OR8G5-201ENST00000524943 1041 ntBASIC4.76□□□□□ -1.65
BDNFP23560 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.76□□□□□ -1.65
BDNFP23560 LINC00622-201ENST00000562811 1570 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC104072.1-201ENST00000568817 668 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 AC005412.1-201ENST00000580812 1049 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.76□□□□□ -1.65
BDNFP23560 AP002802.2-201ENST00000605877 235 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AC090948.1-201ENST00000607464 549 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AL159169.3-201ENST00000608871 561 ntBASIC4.76□□□□□ -1.65
BDNFP23560 AL445423.1-201ENST00000609941 536 ntBASIC4.76□□□□□ -1.65
BDNFP23560 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC4.76□□□□□ -1.65
BDNFP23560 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
BDNFP23560 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.75□□□□□ -1.65
BDNFP23560 RNU6-839P-201ENST00000363347 108 ntBASIC4.75□□□□□ -1.65
BDNFP23560 RNU6-339P-201ENST00000384310 107 ntBASIC4.75□□□□□ -1.65
BDNFP23560 Y_RNA.493-201ENST00000384422 102 ntBASIC4.75□□□□□ -1.65
BDNFP23560 HSPE1P26-201ENST00000405341 275 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC092638.1-201ENST00000411966 1275 ntBASIC4.75□□□□□ -1.65
BDNFP23560 CYP4F29P-201ENST00000420685 446 ntBASIC4.75□□□□□ -1.65
BDNFP23560 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 CHIAP3-201ENST00000423668 1133 ntBASIC4.75□□□□□ -1.65
BDNFP23560 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 CYCSP43-201ENST00000438233 310 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AC012671.1-201ENST00000451912 203 ntBASIC4.75□□□□□ -1.65
BDNFP23560 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 HMGN2P7-201ENST00000456186 273 ntBASIC4.75□□□□□ -1.65
BDNFP23560 RPL23AP24-201ENST00000458203 385 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.75□□□□□ -1.65
BDNFP23560 HMGB1P38-201ENST00000490557 577 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC026979.1-201ENST00000492525 396 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.75□□□□□ -1.65
BDNFP23560 NAMPTP2-201ENST00000505629 1115 ntBASIC4.75□□□□□ -1.65
BDNFP23560 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AC093840.1-201ENST00000511599 336 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC015795.1-201ENST00000513669 327 ntBASIC4.75□□□□□ -1.65
BDNFP23560 snoZ278.1-201ENST00000517059 112 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.75□□□□□ -1.65
BDNFP23560 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 AC008507.2-201ENST00000588402 1176 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC006116.7-201ENST00000590141 756 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms