Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 MTND5P24-201ENST00000438892 1767 ntBASIC5.14□□□□□ -1.59
TDP1Q9NUW8 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
TDP1Q9NUW8 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC005005.4-201ENST00000623789 16698 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MIR506-201ENST00000384998 124 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 PGBD4P8-201ENST00000412993 562 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC119751.6-201ENST00000416712 186 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC093698.1-201ENST00000423843 571 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 RPL23AP56-201ENST00000460778 453 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC090602.1-201ENST00000469695 252 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC013828.1-201ENST00000481845 158 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MTCYBP17-201ENST00000503579 789 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC006499.5-201ENST00000505037 514 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC010625.1-201ENST00000511296 403 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC108043.1-201ENST00000512696 574 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC022884.2-201ENST00000578535 580 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 ELOCP28-201ENST00000590044 317 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 DEFB131E-202ENST00000602581 683 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC004987.4-201ENST00000603383 338 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC083899.3-201ENST00000603413 594 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MIR7703-201ENST00000620784 77 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC019206.1-201ENST00000621938 425 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AL359715.5-201ENST00000623431 443 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 CR381572.2-201ENST00000624852 397 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 MIR7641-1-201ENST00000627518 61 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AC006927.3-201ENST00000638789 384 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 AP001029.2-203ENST00000589795 4910 ntBASIC5.13□□□□□ -1.59
TDP1Q9NUW8 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
TDP1Q9NUW8 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AL450345.1-202ENST00000605741 3881 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 MFSD8-216ENST00000641147 4009 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AL121657.1-201ENST00000327215 531 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RNA5SP505-201ENST00000364748 108 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RNU6-444P-201ENST00000383988 108 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 FABP12P1-201ENST00000401911 322 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RNU6-648P-201ENST00000410190 107 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 GPS2P1-201ENST00000411761 986 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 MTCO1P21-201ENST00000416634 589 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC008280.1-201ENST00000418851 412 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 CYCSP46-201ENST00000423569 204 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 LARP1BP3-201ENST00000437229 869 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AL450023.3-201ENST00000440592 271 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RPL26P28-201ENST00000451325 435 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms